Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0954 ATGGAGGAATCATGGACTAGTTGTCTTTGTGACATGGAACCAGATGATTACAGTTTCATAGGTCAATCAGACATAAAAGTGGATGATGTGAATGGATGTTTAGTATCTCCTCATGATGTAGCCACTGCATTATTAGAGAAGAACCAGCAAAGCTTATTTTCCAGAGAGAGTCACTCTTCAGCGGCTGAGAGTGGCTTAGAGAGGCCTTTCAAGTTGCCAAAGAGAGAACAACTCTCACAAAAGATAGCTTCTAGTTCTACTCCCAGCTCCTATATTCTCTCCTTTGACAACATGAATCCACCAACAATAAAGGTTGAATCTGCCTCAAAGCCAGGCACCAAGGTTGTGAATCTTGAGAAAGCTTTGCCTTCAAAGAATGAACCAACAAGACCACAGGAAAACAAGAAAATGGGCTCATTTGCCAGATCTTCTCATCACACACAAGATCACATCATTGCTGAGAGAATGAGGAGAGAGAAAATTAGCCAGCAGTTCATTGCCCTCTCTGCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTCTGTTGGGGGAGGCTATAAGGTATGTGAAGCAGCTGAAGGAGCAAGTGAAGCTGCTGGAGGAGCAGAGCAAAAGGAAAAACGAGGAATCTGTGATGTTTGCGAAGAAATCTCAGGTTTTTCTTGCGGACGAGGATGTCTCAGACACTTCGTCAAACTCCTGCGAGTTCGGAAACTCCGATGATCCCTCGTCAAAAGCGAATTTTTTGTCACTACCAGAAGTTGAAGCGAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAGGAAAAGACAGTGCTGGTGAACATTTTCAGAGAGATAGAGAAACTTCATCTCTCGATCATCTATAGTAGCGCCTTGTCTTTCGGTTCCTCTGTTCTCGACACAACCATAGTAGCCGAGATGGAGGATGAATTCAACATGGGGGTGAAGGAACTGGCTAGAAATCTCAGAGTAGGATTAATGCAATTTATGTAG 1011 0.4392 MEESWTSCLCDMEPDDYSFIGQSDIKVDDVNGCLVSPHDVATALLEKNQQSLFSRESHSSAAESGLERPFKLPKREQLSQKIASSSTPSSYILSFDNMNPPTIKVESASKPGTKVVNLEKALPSKNEPTRPQENKKMGSFARSSHHTQDHIIAERMRREKISQQFIALSALIPDLKKMDKVSLLGEAIRYVKQLKEQVKLLEEQSKRKNEESVMFAKKSQVFLADEDVSDTSSNSCEFGNSDDPSSKANFLSLPEVEARVSKKNVLIRILCEKEKTVLVNIFREIEKLHLSIIYSSALSFGSSVLDTTIVAEMEDEFNMGVKELARNLRVGLMQFM* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0954 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Gso5g0954 336 PANTHER BHLH TRANSCRIPTION FACTOR 1 336 - -
Gso5g0954 336 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 336 - -
Gso5g0954 336 SMART finulus 151 200 IPR011598 GO:0046983
Gso5g0954 336 Coils Coil 184 211 - -
Gso5g0954 336 MobiDBLite consensus disorder prediction 123 145 - -
Gso5g0954 336 Gene3D - 143 216 IPR036638 GO:0046983
Gso5g0954 336 Pfam Helix-loop-helix DNA-binding domain 149 195 IPR011598 GO:0046983
Gso5g0954 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0954 Gso-Chr5 31257297 31259906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0954 135 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.010 8.33e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g0954 HLH 5.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0954 - - gmx:100787596 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0954 5 31257297 31259906 Gso17g1317 17 13238250 13240797 GST
Gso1g1702 1 53717954 53720831 Gso5g0954 5 31257297 31259906 PCT
Gso11g0376 11 3249851 3252732 Gso5g0954 5 31257297 31259906 PCT
Gso5g0954 5 31257297 31259906 Gso1g1702 1 53717954 53720831 PCT
Gso5g0954 5 31257297 31259906 Gso11g0376 11 3249851 3252732 PCT