Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0953 ATGATGCAAATTTCGTCAACCATGTACATGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCACCAATACCCTATGGATAATTCTGTATTATTCCAGCTCGAAGATCTTGACTTTGAGTCCTTCTCCGCGTCCCCAAAGAACTCTTCCTCTCCCAAGCGATTCAACTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAATCCTGAACAATATTCTGTTACCCCTCCAAGACCAACCAAGCAAAATAAGACTGTGAGCACTACTTGGAGTGCTTACAACACTCATGACATGATGGCTCCGAAAGCTTCTTCTTCTTCATCCTCCAAGATCATCTCCTTTGAGAACTCCAATGCATCTTCGGTTACTTCCCAACAACTATACAACGTGGATGCTGCTTCCAAAGTGAAGAAGCCCAAGAGTGAAACTGGGTATGGTGAAAACTTGGATTTTGCAGCAGCTGCGGCTTCTCAAAGTGTCTATGACAACAACAGTTTTCTAGATCACTATGATACTCGAGAGAAAAAGGCTGCAGCTTCATTGACTAGAAACCCTACCCAAGCTCAAGATCATGTAATATCCGAGAGAAAACGAAGGGAAAAGCTCAGTCAGAGGTTCATTGCTCTTTCGGCTATAATTCCTGGACTCAAGAAGATGGACAAGGCTACCGTCTTGGAAGATGCTATAAAGTACGTGAAACAACTACAAGAAAGGGTAAAGACTCTGGAGGAACAAGCTGTGGATAAAACAGTTGAATCAGCAGTATTTGTGAAGAGATCTGTTGTGTTTGCCGGTGATGATAGCTCCGACAACGACGAAAACTCCGACCAGTCGCTCCCCAAAATCGAAGCAAGAATTTCTGGTAAAGAGGTACTAATCAGAATCCACTCCGACAAACACAGTGGAGGAGCTGCTGCTATACTAAGGGAATTAGAGAAGCATCATCTCACAGTTCAGAGTAGCAGCTTCTTGCCCTTTGGGAATAACACTTTTGACATTACTATTGTTGCCAAGATGAACATGGACTACTGCTTCACAGCAAAGGATCTCATAAGAAGCTTAAGTCGGTGTTTGAGGCAGCTTTGA 1086 0.4355 MMQISSTMYMPEFGMEDPTLFHQYPMDNSVLFQLEDLDFESFSASPKNSSSPKRFNSESTQNSSLTQNPEQYSVTPPRPTKQNKTVSTTWSAYNTHDMMAPKASSSSSSKIISFENSNASSVTSQQLYNVDAASKVKKPKSETGYGENLDFAAAAASQSVYDNNSFLDHYDTREKKAAASLTRNPTQAQDHVISERKRREKLSQRFIALSAIIPGLKKMDKATVLEDAIKYVKQLQERVKTLEEQAVDKTVESAVFVKRSVVFAGDDSSDNDENSDQSLPKIEARISGKEVLIRIHSDKHSGGAAAILRELEKHHLTVQSSSFLPFGNNTFDITIVAKMNMDYCFTAKDLIRSLSRCLRQL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0953 361 PANTHER BHLH TRANSCRIPTION FACTOR 1 359 - -
Gso5g0953 361 Gene3D - 178 250 IPR036638 GO:0046983
Gso5g0953 361 CDD bHLH_AtNAI1_like 188 260 - -
Gso5g0953 361 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 359 - -
Gso5g0953 361 Coils Coil 225 252 - -
Gso5g0953 361 MobiDBLite consensus disorder prediction 42 86 - -
Gso5g0953 361 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Gso5g0953 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Gso5g0953 361 SMART finulus 192 241 IPR011598 GO:0046983
Gso5g0953 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 246 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0953 Gso-Chr5 31198406 31201942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0953 2 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.580 1.49e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g0953 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0953 - - gmx:100798011 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0953 5 31198406 31201942 Gso17g1318 17 13259467 13262478 GST
Gso1g1700 1 53698111 53700696 Gso5g0953 5 31198406 31201942 PCT
Gso11g0377 11 3262819 3265288 Gso5g0953 5 31198406 31201942 PCT
Gso5g0953 5 31198406 31201942 Gso1g1700 1 53698111 53700696 PCT
Gso5g0953 5 31198406 31201942 Gso11g0377 11 3262819 3265288 PCT