Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0950 ATGCGAGTCCTCGTCTTGTTCTTCCTTTTCCTCCACTCCCTCCAAGCAGCGCGCATCTCAGAGTACCGCGCGCTGCTCTCTTTCAAAGCCTCCTCCTTAACCGACGACCCCACCCATGCTCTCTCCTCCTGGAACTCCTCCACTCCCTTCTGCTCCTGGTTCGGCCTCACGTGCGACTCTCGCCGCCACGTGACCAGCCTCAACTTAACCTCGTTATCTCTCTCCGGCACTTTATCCGATGACCTCTCCCACCTTCCGTTCCTCTCGCACCTCTCCCTCGCCGACAATAAGTTCTCCGGCCCCATCCCCGCCTCTTTCTCCGCCCTCTCCGCCCTCCGCTTCCTCAACCTCTCCAACAACGTTTTCAACGCCACCTTCCCTTCCCAGCTCAATCGCCTCGCCAACCTTGAGGTTCTCGACCTCTACAACAACAACATGACCGGAGAACTTCCTCTCTCCGTCGCTGCCATGCCCCTCCTCCGCCACCTTCACCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCTCCCGAGTACGGCACCTGGCAGCACCTCCAGTACCTCGCCCTCTCCGGCAACGAGCTCGCCGGCACCATCGCGCCCGAGCTCGGAAACCTCTCCTCCCTCCGCGAGCTCTACATCGGCTACTACAACACCTACTCCGGCGGCATCCCGCCCGAGATTGGAAACCTGTCCAACCTCGTCCGGTTAGACGCCGCCTACTGCGGCCTCTCCGGCGAGATTCCGGCGGAGCTCGGGAAGCTCCAGAATCTGGACACGCTGTTTCTTCAGGTGAATGCGCTCTCCGGCTCGCTCACCCCCGAGCTGGGGAGCCTCAAGAGCCTCAAGTCCATGGACCTCTCCAACAACATGCTCTCCGGCGAGGTTCCGGCGAGTTTTGCGGAGCTGAAGAATCTTACTCTGTTGAACCTGTTCCGGAACAAGCTCCACGGCGCGATTCCTGAGTTTGTTGGAGAGTTACCGGCCTTGGAGGTGTTGCAGCTTTGGGAGAACAACTTCACTGGGAGCATTCCTCAGAATTTGGGGAATAATGGAAGACTCACTCTCGTTGATCTTTCTTCGAACAAGATAACAGGGACGCTTCCTCCTAATATGTGTTACGGGAACCGTCTTCAGACTCTGATAACTCTCGGGAACTATCTGTTCGGTCCCATTCCTGATTCGCTTGGGAAATGCAAGTCTCTGAATAGGATTCGAATGGGAGAGAACTTTCTGAACGGTTCTATTCCGAAGGGTCTATTTGGGCTTCCGAAGCTTACCCAGGTTGAGCTTCAAGATAATCTTCTCACGGGGCAGTTTCCGGAAGATGGTTCCATTGCCACTGATCTTGGTCAGATTAGTCTCTCTAATAACCAGCTCTCTGGGTCGTTGCCATCTACCATTGGCAACTTCACTAGCATGCAGAAGCTTCTTCTTAATGGTAACGAGTTTACGGGGCGAATTCCTCCTCAGATTGGGATGTTGCAACAACTTTCTAAGATTGATTTTAGCCATAACAAGTTCTCGGGTCCCATTGCTCCTGAGATAAGTAAGTGCAAGCTTTTGACCTTCATTGATCTCAGCGGTAATGAGCTCTCTGGTGAGATTCCAAACAAGATTACTTCCATGCGGATTTTGAATTATCTCAACCTTTCAAGAAACCATCTTGATGGGTCCATTCCAGGCAACATTGCCTCTATGCAGAGTCTAACTTCTGTTGATTTTTCATACAACAATTTCTCTGGTTTGGTTCCCGGCACTGGGCAATTCGGCTACTTTAACTACACTTCTTTCTTAGGGAACCCTGAACTCTGTGGCCCTTATTTGGGTCCTTGTAAGGATGGTGTTGCCAATGGCCCTCGACAACCTCATGTTAAAGGTCCATTCTCTTCTTCTCTGAAGCTTTTGTTGGTTATTGGGTTGCTTGTGTGCTCCATACTATTCGCAGTTGCGGCAATATTCAAAGCCCGGGCTTTGAAGAAGGCCAGTGAAGCTAGAGCATGGAAATTAACCGCATTCCAGCGTTTGGACTTCACTGTTGATGATGTTTTGGATTGCTTGAAGGAGGACAACATAATAGGGAAAGGGGGTGCTGGCATTGTGTACAAAGGGGCAATGCCGAACGGGGGTAACGTTGCTGTGAAGAGGTTACCAGCTATGAGCAGAGGATCATCCCATGATCATGGTTTCAATGCTGAGATTCAGACATTGGGGAGGATTCGACACAGACACATTGTTAGACTGCTGGGTTTCTGTTCAAACCATGAGACAAATCTCTTGGTGTATGAGTACATGCCTAATGGAAGTTTAGGTGAGGTTCTTCATGGCAAGAAAGGGGGCCACTTGCATTGGGACACTAGGTATAAGATTGCTGTGGAGGCTGCTAAGGGTCTTTGCTATCTACACCATGACTGCTCACCACTCATCGTCCATAGAGATGTTAAATCCAACAACATCCTTCTTGATTCCAATTTTGAAGCACATGTTGCTGATTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAGCATCTGAATGCATGTCTGCTATTGCTGGTTCTTATGGATACATAGCTCCAGAGTATGCCTACACTTTGAAAGTCGATGAGAAAAGCGATGTGTACAGCTTTGGAGTGGTTCTTTTGGAGCTTGTAACAGGCAGGAAACCAGTTGGCGAGTTTGGTGATGGTGTGGACATTGTGCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGGTGTTCTAAAAGTTCTTGATTCCAGACTTCCCTCAGTTCCACTTCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAGGAACAGGCAGTGGAACGGCCTACAATGCGCGAAGTTGTTCAAATTCTGACCGAGCTTCCAAAGCCACCAAGCTCAAAACATGCAATCACAGAATCCTCTTTGTCGTCATCAAACAGTTTAGGGTCTCCAACCACGGCATCAAAGGAACCTAAAGATAATCAACATCCTCCTCAGTCGCCACCACCCGATCTACTTAGTATTTGA 3027 0.5018 MRVLVLFFLFLHSLQAARISEYRALLSFKASSLTDDPTHALSSWNSSTPFCSWFGLTCDSRRHVTSLNLTSLSLSGTLSDDLSHLPFLSHLSLADNKFSGPIPASFSALSALRFLNLSNNVFNATFPSQLNRLANLEVLDLYNNNMTGELPLSVAAMPLLRHLHLGGNFFSGQIPPEYGTWQHLQYLALSGNELAGTIAPELGNLSSLRELYIGYYNTYSGGIPPEIGNLSNLVRLDAAYCGLSGEIPAELGKLQNLDTLFLQVNALSGSLTPELGSLKSLKSMDLSNNMLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPQNLGNNGRLTLVDLSSNKITGTLPPNMCYGNRLQTLITLGNYLFGPIPDSLGKCKSLNRIRMGENFLNGSIPKGLFGLPKLTQVELQDNLLTGQFPEDGSIATDLGQISLSNNQLSGSLPSTIGNFTSMQKLLLNGNEFTGRIPPQIGMLQQLSKIDFSHNKFSGPIAPEISKCKLLTFIDLSGNELSGEIPNKITSMRILNYLNLSRNHLDGSIPGNIASMQSLTSVDFSYNNFSGLVPGTGQFGYFNYTSFLGNPELCGPYLGPCKDGVANGPRQPHVKGPFSSSLKLLLVIGLLVCSILFAVAAIFKARALKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPNGGNVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDSRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKHAITESSLSSSNSLGSPTTASKEPKDNQHPPQSPPPDLLSI* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0950 1008 SUPERFAMILY RNI-like 218 583 - -
Gso5g0950 1008 Gene3D Ribonuclease Inhibitor 351 615 IPR032675 -
Gso5g0950 1008 MobiDBLite consensus disorder prediction 967 994 - -
Gso5g0950 1008 SMART serkin_6 686 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0950 1008 SUPERFAMILY Protein kinase-like (PK-like) 680 957 IPR011009 -
Gso5g0950 1008 Gene3D Transferase(Phosphotransferase) domain 1 764 978 - -
Gso5g0950 1008 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 995 - -
Gso5g0950 1008 Gene3D Phosphorylase Kinase; domain 1 652 763 - -
Gso5g0950 1008 Pfam Protein tyrosine and serine/threonine kinase 688 957 IPR001245 GO:0004672|GO:0006468
Gso5g0950 1008 SUPERFAMILY L domain-like 43 271 - -
Gso5g0950 1008 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 995 - -
Gso5g0950 1008 ProSiteProfiles Protein kinase domain profile. 686 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0950 1008 SMART LRR_typ_2 566 589 IPR003591 -
Gso5g0950 1008 SMART LRR_typ_2 278 301 IPR003591 -
Gso5g0950 1008 SMART LRR_typ_2 85 108 IPR003591 -
Gso5g0950 1008 SMART LRR_typ_2 109 133 IPR003591 -
Gso5g0950 1008 SMART LRR_typ_2 326 350 IPR003591 -
Gso5g0950 1008 SMART LRR_typ_2 157 183 IPR003591 -
Gso5g0950 1008 Gene3D Ribonuclease Inhibitor 81 346 IPR032675 -
Gso5g0950 1008 Gene3D Ribonuclease Inhibitor 15 80 IPR032675 -
Gso5g0950 1008 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Gso5g0950 1008 MobiDBLite consensus disorder prediction 961 1008 - -
Gso5g0950 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0950 Gso-Chr5 31125399 31129453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0950 12 993 Receptor kinase-like Gene Family AT5G65700 79.171 0.0 1571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso5g0950 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0950 - - gmx:547592 1959.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0950 5 31125399 31129453 Gso17g1320 17 13299542 13303515 GST
Gso1g1699 1 53682955 53686811 Gso5g0950 5 31125399 31129453 PCT
Gso11g0378 11 3276402 3280891 Gso5g0950 5 31125399 31129453 PCT
Gso5g0950 5 31125399 31129453 Gso1g1699 1 53682955 53686811 PCT
Gso5g0950 5 31125399 31129453 Gso11g0378 11 3276402 3280891 PCT