Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0943 ATGATGGGTCTTGATCAAGATGCTAGCAGCAACTCTGGCCTTCAGCTTATTCTAGGGTTAGCTTTGACTGCCACCACCACCACCACTCCATCATCACCACCATCCATTTCCAACAAGCTTGATCATGTTGATCATCACCACCATCTTATAACTCTTAGACCAACAACAAAGTCATCCTATAATTCCTCTGAGGCTGAACCATCATTAACGTTGGGTCTTTCCCGGGAGAGTTACCTCAAAGTCCCCAAAAGCATCATAGGACACAACAACAACAAAGTCTCATCCTGTGATGACCCTCTTGACTTGTCCACACAGACTAATTCACCTCATCACAGTGCTGTTTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATCTCAGCTGTGAAGAAGTTGTGGATGCAAAAGAGATTGATCAGAGGGATCTTAGCTGTGAAGGAATAATAAGAGCCACCGAAGAAGAAGAAGACGGCGCCGCCACCAGAAAGAAACTTAGGCTCACCAAAGAACAATCTGCTTTGCTAGAAGAAAGCTTCAAACAACATAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGTCGAAGCAGTTAAATCTAAGGCCACGACAAGTTGAGGTGTGGTTCCAGAACAGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGATGAAAACAGACGGTTACAGAAGGAGCTTCAAGAGCTGAAGGCACTGAAACTGGCTCAGCCGTTGTACATGCCTATGCCTGCGGCAACACTCGCCATGTGCCCCTCTTGCGAGAGGCTCGGCGGCAGCGCCGTCAACGGTGCCGGCGGTTCCCCCAAGACATCATTCTCCATGGCCCCTAAGCCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 936 0.485 MMGLDQDASSNSGLQLILGLALTATTTTTPSSPPSISNKLDHVDHHHHLITLRPTTKSSYNSSEAEPSLTLGLSRESYLKVPKSIIGHNNNKVSSCDDPLDLSTQTNSPHHSAVSSFSSGRVKRERDLSCEEVVDAKEIDQRDLSCEGIIRATEEEEDGAATRKKLRLTKEQSALLEESFKQHSTLNPKQKQALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLAMCPSCERLGGSAVNGAGGSPKTSFSMAPKPHFFNPFANPSAAC* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0943 311 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Gso5g0943 311 SMART halz 219 262 IPR003106 GO:0006355|GO:0043565
Gso5g0943 311 Gene3D - 156 224 - -
Gso5g0943 311 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Gso5g0943 311 SMART HOX_1 161 223 IPR001356 GO:0003677
Gso5g0943 311 MobiDBLite consensus disorder prediction 90 121 - -
Gso5g0943 311 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Gso5g0943 311 Coils Coil 225 255 - -
Gso5g0943 311 CDD homeodomain 163 220 IPR001356 GO:0003677
Gso5g0943 311 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Gso5g0943 311 PANTHER - 54 311 - -
Gso5g0943 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 54 311 - -
Gso5g0943 311 SUPERFAMILY Homeodomain-like 162 227 IPR009057 -
Gso5g0943 311 MobiDBLite consensus disorder prediction 90 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0943 Gso-Chr5 30951447 30953154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0943 2 311 Homeobox Transcription Factor Family AT4G37790 54.890 3.60e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso5g0943 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0943 K09338 - gmx:100784937 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0943 5 30951447 30953154 Gso17g1327 17 13464679 13466494 GST
Gso1g1690 1 53594784 53596529 Gso5g0943 5 30951447 30953154 PCT
Gso11g0387 11 3358133 3359928 Gso5g0943 5 30951447 30953154 PCT
Gso5g0943 5 30951447 30953154 Gso1g1690 1 53594784 53596529 PCT
Gso5g0943 5 30951447 30953154 Gso11g0387 11 3358133 3359928 PCT