Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0940 ATGGGAAGAGCTCCTTGCTGTGACAAAGCTAATGTCAAGAGAGGTCCATGGTCACCTGAAGAAGACACCAGACTCAAATCTTATATTGAAGAGCATGGCACTGGTGGCAACTGGATAGCGTTGCCTCAAAAATTAGGCCTCAAGAGGTGTGGGAAAAGCTGTCGTCTCAGGTGGCTGAATTATCTTCGTCCAAACATCAAACACGGAAATTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTACCATTGGAAGCAGGTGGTCTATTATAGCAGCGCAATTACCAGGGCGCACGGATAATGACATAAAGAACTATTGGAACACTAAGCTAAAGAAAAAGCTACTGGGGAAGCAAAGAAAGCTGGAGCAACAAGCTCAAGCTCGCAAAGTTTTTAACCAAAAGCAACAGATCAAGAGAGAGAGTGAAGATTTGATGTTACCTGTTGGAGTTACTACCCGAACTCCTTATTGGCCTGAACAACAATATTCTTGGCCCATTCCAGTGGCAAATAATGCTTCCATCCAATACTCCAATCTCAACAACAATAATCAAACATCATCATTCAGCAAACACTTCCCCAACAACATAGTCACTGCCACCACCATGAATTCACAACACTCATCACGTGACATTTCCTTAACACAAAACCAGTTACATGATTTACACCCCTCCACATTAATGAACATGATAAGCACGGACACGTGTCACACATCAAACGTATTTCAAGGGTTTGTGAAACTTTCCAGTGATTTTCCCTGTGTGAACCAGCAACAAATAGATGGAACAATGCGAGTTTTTTATGGATTGGAAACCATGGACATGGCAACAAATGGTAGCACAAACACTACTTCGACAGAAAGCACTAGTTGGGGAGACATAAACTCTTTGGTTTACTCGCCTTTGTTGGTTTCTGACCACGAAGCTTGTCAACAAAGAATAATAATGCCTCAAGATGTCACTTTTGAGGAATCTAGTTGCTTTGCAATGCAAAGGCAATAA 1008 0.4177 MGRAPCCDKANVKRGPWSPEEDTRLKSYIEEHGTGGNWIALPQKLGLKRCGKSCRLRWLNYLRPNIKHGNFSEEEDNIICSLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKLEQQAQARKVFNQKQQIKRESEDLMLPVGVTTRTPYWPEQQYSWPIPVANNASIQYSNLNNNNQTSSFSKHFPNNIVTATTMNSQHSSRDISLTQNQLHDLHPSTLMNMISTDTCHTSNVFQGFVKLSSDFPCVNQQQIDGTMRVFYGLETMDMATNGSTNTTSTESTSWGDINSLVYSPLLVSDHEACQQRIIMPQDVTFEESSCFAMQRQ* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0940 335 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso5g0940 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso5g0940 335 SMART sant 13 64 IPR001005 -
Gso5g0940 335 SMART sant 67 115 IPR001005 -
Gso5g0940 335 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso5g0940 335 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso5g0940 335 CDD SANT 16 62 IPR001005 -
Gso5g0940 335 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 314 - -
Gso5g0940 335 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso5g0940 335 PANTHER OS09G0431300 PROTEIN 1 314 - -
Gso5g0940 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso5g0940 335 Gene3D - 7 68 - -
Gso5g0940 335 Gene3D - 69 145 - -
Gso5g0940 335 CDD SANT 70 111 IPR001005 -
Gso5g0940 335 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0940 Gso-Chr5 30841284 30843032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0940 1 302 MYB Transcription Factor Family AT3G49690 47.664 2.81e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0940 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0940 K09422 - gmx:100792374 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0940 5 30841284 30843032 Gso17g1330 17 13516115 13517894 GST
Gso1g1688 1 53561457 53563540 Gso5g0940 5 30841284 30843032 PCT
Gso11g0391 11 3389929 3391862 Gso5g0940 5 30841284 30843032 PCT
Gso5g0940 5 30841284 30843032 Gso1g1688 1 53561457 53563540 PCT
Gso5g0940 5 30841284 30843032 Gso11g0391 11 3389929 3391862 PCT