Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0936 ATGAAGAGTATGGAAAATGATGACAATGCTGACCTTAATAATCAAAACAATTGGTTGGGTTTCTCACTCTCTCCTCAAATGCATAATATAGGAGTTTCTTCACACTCACAACCTTCCTCTGCTGCTGAAGTGGTTCCTACAAGCTTTTACCACCACACTGCTCCACTTAGTAGCTATGGTTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCAGCTTTGCCAATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGATTGGAAACTTTAAGCAGGTCACAAGCACAAGCAATGGCTACTACTTCAACACCAAAACTGGAGAACTTCTTAGGTGGGGAAGCCATGGGGACCCCTCATCACTACGAATGTAGTGCCACAGAAACAATGCCTCTGAGCTTAGACAGTGTTTTTTACATCCAACCCTCACGCCGTGACCCAAATAATAACCAAACCTACCAAAACCATGTTCAACACATTAGCACCAACCAACAACAACAACAGCAAGAGCTTCAAGCATATTACTCTACCTTGAGAAACCATGATATGATATTAGAAGGGTCAAAGCAAAGCCAAACTTCTGACAACAACAATCTTCATGTTCAAAACATGGGTGGTGATGATGCCGTTCCTGTTCCTGGCCTCAAGAGTTGGGAAGTGAGGAACTTCCAAGCTAGCCATGCACATGAGTCAAAGATGATTGTTCCTCATGTGGAGGAAAATGCTGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGTGACTTGCAATCGTTGAGCTTGTCCATGAGTCCTAGCTCTCAGTCTAGCAGTGTCACAAGTTCTCACCGTGCTTCACCTGCTGTCGTTGATTCTGTTGCCATGGATACTAAGAAAAGGGGGCCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCCCAGTATAGAGGAGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTTTGGGACAACAGCTGCAAGAAAGAGGGGCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGGTCTCATAGGCCAACAACCACTCACAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAGTACACAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCCGAGGAGCGAATGCTGTAACCAACTTTGACATAACAAGATATGATGTGGAGAAAATCATGGCAAGCAGCAACCTCCTTAGCAGTGAGCTAGCTAGGCGCAACCGAGAGACGGACAATGAAACTCAGTGCATTGATCAAAATCACAATAAGCCTTCTGCATATGAGGACACTCAAGAAGCTATTCTAATGCACCAGAAGAGCTGTGAGAGCGAAAATGATCAGTGGAAGATGGTTCTCTACCAATCCTCTCAGCAACTTGAGCAGAATCCACCAACAATTGAGAGTGACAGAACTAACCAGTCCTTCGCAGTGGCTTTGGACAGCATGTTTCATCAGGAAGTAGAGGAATCAAGTAAGGTGAGGACGCATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCATCAAAACTATTGGCTACTAATCCAAATAACGTGAATTCTTGGGACCCTTCACCCCATTTGAGGCCAGCACTTACTTTGCCTCAAATGCCAGTTTTTGCAGCTTGGACAGATGCATAG 2025 0.4415 MKSMENDDNADLNNQNNWLGFSLSPQMHNIGVSSHSQPSSAAEVVPTSFYHHTAPLSSYGFYYGLEAENVGLYSALPIMPLKSDGSLYGLETLSRSQAQAMATTSTPKLENFLGGEAMGTPHHYECSATETMPLSLDSVFYIQPSRRDPNNNQTYQNHVQHISTNQQQQQQELQAYYSTLRNHDMILEGSKQSQTSDNNNLHVQNMGGDDAVPVPGLKSWEVRNFQASHAHESKMIVPHVEENAGESGSIGSMAYGDLQSLSLSMSPSSQSSSVTSSHRASPAVVDSVAMDTKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRSHRPTTTHRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDITRYDVEKIMASSNLLSSELARRNRETDNETQCIDQNHNKPSAYEDTQEAILMHQKSCESENDQWKMVLYQSSQQLEQNPPTIESDRTNQSFAVALDSMFHQEVEESSKVRTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTASKLLATNPNNVNSWDPSPHLRPALTLPQMPVFAAWTDA* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0936 674 Coils Coil 387 407 - -
Gso5g0936 674 SUPERFAMILY DNA-binding domain 319 388 IPR016177 GO:0003677
Gso5g0936 674 MobiDBLite consensus disorder prediction 262 303 - -
Gso5g0936 674 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 672 - -
Gso5g0936 674 ProSiteProfiles AP2/ERF domain profile. 422 489 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 672 - -
Gso5g0936 674 CDD AP2 319 386 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 ProSiteProfiles AP2/ERF domain profile. 320 386 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 SMART rav1_2 422 495 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 SMART rav1_2 320 392 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 CDD AP2 421 491 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 Pfam AP2 domain 320 378 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 Pfam AP2 domain 438 481 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 MobiDBLite consensus disorder prediction 262 282 - -
Gso5g0936 674 MobiDBLite consensus disorder prediction 600 637 - -
Gso5g0936 674 Gene3D AP2/ERF domain 319 388 IPR036955 GO:0003700|GO:0006355
Gso5g0936 674 Gene3D AP2/ERF domain 422 491 IPR036955 GO:0003700|GO:0006355
Gso5g0936 674 MobiDBLite consensus disorder prediction 594 637 - -
Gso5g0936 674 PRINTS Ethylene responsive element binding protein signature 321 332 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 PRINTS Ethylene responsive element binding protein signature 368 388 IPR001471 GO:0003700|GO:0006355
Gso5g0936 674 SUPERFAMILY DNA-binding domain 437 490 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0936 Gso-Chr5 30659891 30664295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0936 611 674 AP2-EREBP Transcription Factor Family AT4G37750 38.158 4.31e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso5g0936 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0936 K09285 - gmx:100787611 1284.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0936 5 30659891 30664295 Gso17g1333 17 13574921 13579702 GST
Gso1g1685 1 53499060 53502719 Gso5g0936 5 30659891 30664295 PCT
Gso11g0394 11 3446104 3449912 Gso5g0936 5 30659891 30664295 PCT
Gso5g0936 5 30659891 30664295 Gso1g1685 1 53499060 53502719 PCT
Gso5g0936 5 30659891 30664295 Gso11g0394 11 3446104 3449912 PCT