Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0934 ATGCTCTCCGCCCTCACTCCTTCCGACCCCTTCTCTCCCTTCTCCCCCTTCTCCGCCGGCTTCACGCCGTGGGATGACAACGACGATTCCCACGCCCTCTTCTCCCCCAAACCGGTCTCTGCTTCTAGCTCCGCCTCTGACTATAAATCCGAACCGAACCCAACCGAACACGTATGCGCCTCGTCCTCGGTGATGATGGACGAGCGGAAACGGCGCCGCATGATATCGAACCGGGAATCGGCCCGCAGGTCCAGGATGCGGAAACAGAGACACCTGGAGAATCTTCGGAACCAGTTGAACAAGTGCAGGGTCGAAAACCGGGAACTCGGTAACCGGTTGCAGTTCTTCCTGCACCACCTGAACCGCCTCCGAACCGAAAACGAATGGCTCCGCTCCGAGCGAACCCTGCTACGCCAAAAAGTCGCCAATTTAACACAAATTTTGATTTTCCAACAATTCCAAACCACCTTCTCCCCTGCTGCATGGACCACATGCACCAACAACAACACCACCTCGCTCATGACAATTAATCAAGTTAATTAA 543 0.5488 MLSALTPSDPFSPFSPFSAGFTPWDDNDDSHALFSPKPVSASSSASDYKSEPNPTEHVCASSSVMMDERKRRRMISNRESARRSRMRKQRHLENLRNQLNKCRVENRELGNRLQFFLHHLNRLRTENEWLRSERTLLRQKVANLTQILIFQQFQTTFSPAAWTTCTNNNTTSLMTINQVN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0934 180 SMART brlzneu 65 129 IPR004827 GO:0003700|GO:0006355
Gso5g0934 180 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 72 87 IPR004827 GO:0003700|GO:0006355
Gso5g0934 180 PANTHER BZIP TRANSCRIPTION FACTOR 44 25 171 - -
Gso5g0934 180 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 67 130 IPR004827 GO:0003700|GO:0006355
Gso5g0934 180 MobiDBLite consensus disorder prediction 36 60 - -
Gso5g0934 180 PANTHER BNACNNG60880D PROTEIN 25 171 - -
Gso5g0934 180 MobiDBLite consensus disorder prediction 29 88 - -
Gso5g0934 180 CDD bZIP_plant_GBF1 70 121 IPR045314 GO:0003700|GO:0006355
Gso5g0934 180 Coils Coil 78 112 - -
Gso5g0934 180 MobiDBLite consensus disorder prediction 63 82 - -
Gso5g0934 180 Coils Coil 120 140 - -
Gso5g0934 180 Gene3D - 67 119 - -
Gso5g0934 180 SUPERFAMILY Leucine zipper domain 69 120 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0934 Gso-Chr5 30590434 30591370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0934 1 152 bZIP Transcription Factor Family AT3G49760 38.554 5.26e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso5g0934 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0934 - - gmx:778153 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0934 5 30590434 30591370 Gso17g1337 17 13649383 13650219 GST
Gso1g1684 1 53489441 53490277 Gso5g0934 5 30590434 30591370 PCT
Gso11g0395 11 3466020 3466703 Gso5g0934 5 30590434 30591370 PCT
Gso5g0934 5 30590434 30591370 Gso1g1684 1 53489441 53490277 PCT
Gso5g0934 5 30590434 30591370 Gso11g0395 11 3466020 3466703 PCT