Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0930 ATGCCAATGTTTGAGCCTCATTGTAAGAGGGGTGGGGTGGAGGGCCAGATTCTAGATCTGGACACGGCGGTGAAAGATGGGGTTTTGGGTGGTGGTGTGGATACTGGGGTTGTGGGAACTGGGGTTGGTGAAAAATTGGATCTTGGGAAAATGATTGAAGAGTTGGACCTGTGTGAAGTTCCCTCTGTGTTCATTTGCCCAATTTCCCTTGAGCCAATGCAGGACCCTGTGACCCTTTGCACTGGCCAGACCTATGAGAGGTGCAACATTCTCAAATGGTTCAGTTTGGGGCACTTCACTTGCCCCACCACAATGCAAGAGCTTTGGGACGGTTCCCTCACTCCAAACACTACCCTCCACCGTTTGATATCCACTTGGTTTTCTCAGAAGTACCTTGTGATGAAGAAGAGATCAGAAGACGTGCAGGGGAGGGTGTTGGAGATCGTTGAAACTCTCAAGAAAGTTAAGGGTCAAGCTCGTGTTTCAGCCCTCAAGGAGCTCCATCAAGTGGTGGCTGCTCACGCTACTGCCCGAAAGGCGTTGGTTGACGGTGGCGGAGTCTCTGTGGTGTCGTCGTTGCTCAGTCCTTTCACCTCGCACACCGTTGGGGCCGAGGTCATTGGTGTTCTTGTGAGTTTGAGCCTTGATTGTGAGTCCAAGAGGAGTCTAGTACAGCCTGCAAAGGTTTCACTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACGAAGATCAATTGCACGTGGCTGATTGAGACACTGATTGAAGAGAAGGATTTTCAGATGGTGATTTTCAGGAGCCATAGCCTTTTGGTTGGATTGATGAGGCTTGTGAAGGACAAGAGGCACACAAATGGAATCTGCTCTGGACTGAGGCTCCTCAGAACACTGTGCTTGCATTCAGAAGTTAAGAGTCTGCTAGTGAGCATTGGGGCTGTTTCTCAATTGGTTCAATTGTTGCCTGGTTTGGAGCATGAATGTTTGGAATTGGCTCTTTCAATTTTGGATGCATTGGCATCAGTCCCTGAAGGCATATTAGCTTTGAAGGATTGTTCTAATACCATACCTGTTATGGTGAAACTGTTGATGAGGGTCTCAGAGAACTGCACTCAATATGCATTGTCGATACTATGGTCTGTGTGCAATGTTGCACCTGATGAGTGCTCTTTGATTGCTGTGGAAGCAGGACTTGCTGCAAAGCTCCTCCTTGTGATTCAAAGCGGTTGCAATCCTATATTGAAACAACAATCCACCGAGCTTTTGAAGTTGTGTAGTTTGAATTATTCAGATACAATCTTCATTTCCAAGTGCAAGCTTACTAGAACAATCCAATGA 1335 0.4712 MPMFEPHCKRGGVEGQILDLDTAVKDGVLGGGVDTGVVGTGVGEKLDLGKMIEELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERCNILKWFSLGHFTCPTTMQELWDGSLTPNTTLHRLISTWFSQKYLVMKKRSEDVQGRVLEIVETLKKVKGQARVSALKELHQVVAAHATARKALVDGGGVSVVSSLLSPFTSHTVGAEVIGVLVSLSLDCESKRSLVQPAKVSLMVDILNEGSIETKINCTWLIETLIEEKDFQMVIFRSHSLLVGLMRLVKDKRHTNGICSGLRLLRTLCLHSEVKSLLVSIGAVSQLVQLLPGLEHECLELALSILDALASVPEGILALKDCSNTIPVMVKLLMRVSENCTQYALSILWSVCNVAPDECSLIAVEAGLAAKLLLVIQSGCNPILKQQSTELLKLCSLNYSDTIFISKCKLTRTIQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0930 444 Pfam U-box domain 60 130 IPR003613 GO:0004842|GO:0016567
Gso5g0930 444 PANTHER WDSAM1 PROTEIN 33 443 IPR045185 GO:0061630
Gso5g0930 444 Gene3D - 134 437 IPR011989 -
Gso5g0930 444 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Gso5g0930 444 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 33 443 - -
Gso5g0930 444 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
Gso5g0930 444 SUPERFAMILY ARM repeat 230 430 IPR016024 -
Gso5g0930 444 SUPERFAMILY RING/U-box 54 130 - -
Gso5g0930 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 133 IPR013083 -
Gso5g0930 444 CDD RING-Ubox_PUB 64 106 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0930 Gso-Chr5 30433821 30436279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0930 1 444 U-box Gene Family AT3G49810 70.067 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0930 - - gmx:100781741 842.802