Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0920 ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCGCTGAAAGCTGGAGTACTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATCTTGCGTATGCGTTCGAATGTGGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTACCAGCCCCCAAAATTGATAATAACCATATGGCCTTGAGTACCATAGTTCGAAATGATGAAGTTCTTGATACTAAGCCCATAGCAGTTTCTGGTGGACCATTGCAATCCCCCAATTTGAAAGAACAAATATCAAGGTTGGTGGATAATCATATATTAGAGGCCATTGTCAATATGAAGGAGCAGAAGGGTTCTGACAAGGTTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTCACCACCTGATCTCAGTAAATTGCTGTCAACCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAGTCAAGGAAAAGCATAAGTACAGAATTGCGCCAAGTTCAACTGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGAGAAGCCCAAAGATCCTTCAGAAGTACATAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGATTTCGAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCTGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA 888 0.4459 MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTIVRNDEVLDTKPIAVSGGPLQSPNLKEQISRLVDNHILEAIVNMKEQKGSDKVAIASFIEEKYRSPPDLSKLLSTKLKHMVASGKIVKEKHKYRIAPSSTVSEKRRCSSLVLLEEKPKDPSEVHKNDDVNILSKSQIDAEISKVKGLTAQEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0920 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gso5g0920 295 Gene3D - 2 59 - -
Gso5g0920 295 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Gso5g0920 295 SMART sant 4 59 IPR001005 -
Gso5g0920 295 CDD SANT_TRF 6 57 - -
Gso5g0920 295 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Gso5g0920 295 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso5g0920 295 SMART h15plus2 104 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso5g0920 295 PANTHER MYB TRANSCRIPTION FACTOR 1 295 - -
Gso5g0920 295 Gene3D - 113 199 IPR036388 -
Gso5g0920 295 Coils Coil 243 280 - -
Gso5g0920 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gso5g0920 295 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gso5g0920 295 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
Gso5g0920 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0920 Gso-Chr5 30003197 30011097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0920 1 292 Single Myb Histone (SMH) Gene Family AT5G67580 55.068 1.31e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso5g0920 Linker_histone 3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0920 K09422 - gmx:100779583 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0920 5 30003197 30011097 Gso17g1352 17 13914887 13924416 GST
Gso1g1673 1 53383980 53391251 Gso5g0920 5 30003197 30011097 PCT
Gso11g0407 11 3568262 3572356 Gso5g0920 5 30003197 30011097 PCT
Gso5g0920 5 30003197 30011097 Gso1g1673 1 53383980 53391251 PCT
Gso5g0920 5 30003197 30011097 Gso11g0407 11 3568262 3572356 PCT