Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0910 ATGGAGAGTTATTTGCATGAGAATTTTGGAGGAGTGAAGTCCAAAAACACTACTGAAGAGGCTCTTCAGAAATGGAGGAAGGTATGTGGGGTTGTAAAGAACCCCAAACGACGTTTTCGATTCACTGCCAACATCTCCAAGCGCTCCGAAGCTGCTGCTATGCGTCGTACCAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAGTTTATCCAAGGTGTTCAACCAAGCGATTACGTTGTACCTGATGAAGTAAAAGCTGCAGGTTTCCAAATCTGTGCTGAAGAATTGGGGTCTATTGTTGAAGGCCATGACGTAAAGAAGCTCAAGTTTCATGGTGGAGTAGATGGCATTGCAGGAAAGCTTTCAACATCAACCACCACGGGGCTTAGTGGTGATTCTGAATCACGGCACAGGAGACAAGAGCTTTTTGGAGTGAATAAATTCACTGAAAGCGAAGTTCGGAGTTTCTGGATTTTTGTTTATGAAGCCCTTCAAGACATGACTCTCATGATCCTAGGAGTGTGTGCTTTTGTTTCTCTGATAGTTGGCATAGCAACAGAAGGATGGCCCAAAGGTGCTCATGATGGACTCGGAATCGTTGCAAGTATCTTACTAGTAGTCTTTGTGACAGCAACAAGCGATTATCGCCAATCGTTGCAATTCAAGGACTTAGACAAGGAGAAGAAAAAGATTTCCATTCAAGTCACAAGAAACGGTTACAGGCAGAAAATGTCAATATATAGTTTACTCCCTGGTGATATCGTGCATCTTTCAATTGGAGACCAAGTCCCTGCAGATGGTTTATTTGTTTCAGGATTTTCTGTGTTGATTGACGAGTCAAGTTTAACTGGTGAGAGTGAGCCGGTGATGGTGACTTCCCAGAATCCTTTTCTTCTCTCCGGAACCAAGGTCCAAGATGGATCTTGCACCATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGCAAGTTGATGGCAACTCTGAGTGAAGGTGGAGATGATGAAACCCCATTGCAGGTGAAACTGAATGGAGTAGCAACAATTATTGGGAAGATAGGACTCGTCTTTGCGGTAATTACCTTTGCAGTTTTGGTGAAAGGACTAATGGGCCGCAAACTCCAAGAAGGAAGGTTCTGGTGGTGGTCAGCAGATGATGCAATGGAGATGTTGGAATTCTTTGCCATTGCTGTTACAATTGTTGTTGTTGCTGTTCCGGAGGGGTTACCATTAGCTGTGACATTGAGCCTTGCATTCGCAATGAAGAAGATGATGAATGACAAGGCCTTGGTGAGGCATTTGGCAGCATGTGAAACTATGGGATCAGCCACAACTATATGCAGTGACAAGACTGGGACACTAACCACCAACCGCATGACCGTGGTGAAAACATGCATTTTTATGAATATCAAGGAAGTGACTAGTAATGATTCTAGTTTGTCCACTGAACTCCCAGATTCTGCTTTGAAAATGTTGCTTCAGTCAATCTTTAATAACACGGGAGGAGAGGTTGTGGTTAACAAAAAGGGTAAGCGCGAGATCTTGGGGACGCCAACTGAGTCAGCACTATTGGAGTTTGGTTTATCACTGGGAGGGGATTTTCATGCAGAGAGACAAACATGTAAAGTTGTTAAAGTTGAGCCATTCAACTCCGAGAGGAAAAGAATGGGTGTGGTTTTGGAGATCCCTGATGGAGGTTTAAGGGCTCATTGTAAAGGCGCTTCTGAAATCATTCTGGCTGCTTGTGACAAGGTGATGAACTCAAACGGCGATGTTGTCTCCATTGACGAAGAATCAAGTAATTATCTGAATAGTACAATCGACCAGTTTGCTAGTGAGGCACTTAGAACTCTTTGCCTTGCGTATATGGAATTGGGTCCAGACTTTAGAGAGAAGACTCAGGAGGAATTGTTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTCTAGACAAACATACACTGGTGAAACACCTTCGTACCACATTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCGGCCCTTCATGAAGCTGATATCGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAATTTCTCCACGATAGTGACAGTAGCCAAATGGGGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTGGTGAACTTCTCATCAGCATGCATGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACTCTAGGAGCACTTGCACTTGCAACTGAACCACCAACTGATGATTTAATGAAGCGCACACCAGTGGGGAGGAAGGGTGAATTCATCAGCAATGTCATGTGGAGGAATATCTTAGGACAAGCGTTGTATCAGTTTGTGGTGATATGGTTTCTTCAGTCAGTAGGAAAATGGGTCTTTTTTCTCCGAGGCCCGGATGCTGAAGTGGTCTTAAACACACTTATTTTCAACACATTCGTATTCTGTCAAGTTTTCAATGAGGTAAACTCTCGTGAGATGGAGGAAGTTGATGTATTTAAAGGCATATGGGATAATCATGTGTTCATAGCTGTCCTCAGTGCGACGGTTTTCTTTCAAATCCTAATAGTCGAGTACTTGGGAACCTTTGCCAACACAACACCTCTCAGTCTGGTACAATGGATCTTTTGCTTAGGAGCTGGATATGTGGGAATGCCACTTGCAGTTCGCTTAAAGCAGATCCCCGTCTGA 2823 0.4378 MESYLHENFGGVKSKNTTEEALQKWRKVCGVVKNPKRRFRFTANISKRSEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQPSDYVVPDEVKAAGFQICAEELGSIVEGHDVKKLKFHGGVDGIAGKLSTSTTTGLSGDSESRHRRQELFGVNKFTESEVRSFWIFVYEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYSLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLVFAVITFAVLVKGLMGRKLQEGRFWWWSADDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCIFMNIKEVTSNDSSLSTELPDSALKMLLQSIFNNTGGEVVVNKKGKREILGTPTESALLEFGLSLGGDFHAERQTCKVVKVEPFNSERKRMGVVLEIPDGGLRAHCKGASEIILAACDKVMNSNGDVVSIDEESSNYLNSTIDQFASEALRTLCLAYMELGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRTPVGRKGEFISNVMWRNILGQALYQFVVIWFLQSVGKWVFFLRGPDAEVVLNTLIFNTFVFCQVFNEVNSREMEEVDVFKGIWDNHVFIAVLSATVFFQILIVEYLGTFANTTPLSLVQWIFCLGAGYVGMPLAVRLKQIPV* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0910 940 Gene3D - 139 336 - -
Gso5g0910 940 Gene3D - 450 462 IPR023214 -
Gso5g0910 940 Gene3D - 632 724 IPR023214 -
Gso5g0910 940 SUPERFAMILY HAD-like 628 727 IPR036412 -
Gso5g0910 940 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 633 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso5g0910 940 Gene3D - 18 77 - -
Gso5g0910 940 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 939 IPR023298 -
Gso5g0910 940 Gene3D - 725 924 - -
Gso5g0910 940 Gene3D - 168 449 - -
Gso5g0910 940 PRINTS Sodium/potassium-transporting ATPase signature 203 223 - -
Gso5g0910 940 PRINTS Sodium/potassium-transporting ATPase signature 446 467 - -
Gso5g0910 940 PRINTS Sodium/potassium-transporting ATPase signature 575 593 - -
Gso5g0910 940 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Gso5g0910 940 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 386 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g0910 940 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 650 763 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g0910 940 Pfam Cation transport ATPase (P-type) 513 591 - -
Gso5g0910 940 Gene3D - 463 631 IPR023299 GO:0000166
Gso5g0910 940 PANTHER CATION TRANSPORTING ATPASE 2 631 - -
Gso5g0910 940 PANTHER CATION TRANSPORTING ATPASE 632 939 - -
Gso5g0910 940 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Gso5g0910 940 PANTHER CALCIUM-TRANSPORTING ATPASE 2 631 - -
Gso5g0910 940 PANTHER CALCIUM-TRANSPORTING ATPASE 632 939 - -
Gso5g0910 940 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 635 IPR023299 GO:0000166
Gso5g0910 940 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Gso5g0910 940 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Gso5g0910 940 PRINTS P-type cation-transporting ATPase superfamily signature 679 698 - -
Gso5g0910 940 PRINTS P-type cation-transporting ATPase superfamily signature 703 715 - -
Gso5g0910 940 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Gso5g0910 940 Pfam E1-E2 ATPase 237 431 - -
Gso5g0910 940 Pfam Cation transporting ATPase, C-terminus 764 932 IPR006068 -
Gso5g0910 940 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0910 Gso-Chr5 29780885 29785880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0910 632 940 Primary Pumps ATPases AT2G22950 81.230 3.34e-174 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0910 K01537 - gmx:100776926 1221.84