Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0902 ATGTGTAAGTGTAAATATTATCGCTATACGCGCATTAAATATGCGCAGGAAGCACCACCAGCACTACTTCTCCGCTTCTTGCTAGTGTGCACCCTTGTTGCCTTGCGTGCGCCGGTTGCGCAGCCCCCTATCGTGCGCATCCCCCCCAATCACCTCACCGAAACTACTAACACCGTCATCACAATCGTTCACCAGCGCCACAGAACCCAGATCTCGGGTTCCACTCGCCCAGCCATGTCCAAGGCGCGTGTCTACACCGATGTCAACGTTCTCCGCCCCAAAGAGTACTGGGATTACGAGTCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGCAAAGTGGGAAGGGGAAAGTACAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGTTGTATAATCAAGATTCTTAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCATAGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGGAAACTCCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTACAAGACTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAACGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTGGTTGGGAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGTTAACAGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGGACACAGTAA 1236 0.4312 MCKCKYYRYTRIKYAQEAPPALLLRFLLVCTLVALRAPVAQPPIVRIPPNHLTETTNTVITIVHQRHRTQISGSTRPAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKAIDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0902 411 PANTHER CASEIN KINASE II SUBUNIT ALPHA 17 411 IPR045216 GO:0004674|GO:0006468
Gso5g0902 411 SMART serkin_6 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0902 411 Gene3D Transferase(Phosphotransferase) domain 1 189 397 - -
Gso5g0902 411 Pfam Protein kinase domain 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0902 411 SUPERFAMILY Protein kinase-like (PK-like) 83 401 IPR011009 -
Gso5g0902 411 Gene3D Phosphorylase Kinase; domain 1 112 188 - -
Gso5g0902 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Gso5g0902 411 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 17 411 - -
Gso5g0902 411 CDD STKc_CK2_alpha 93 397 IPR045216 GO:0004674|GO:0006468
Gso5g0902 411 ProSiteProfiles Protein kinase domain profile. 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0902 411 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0902 Gso-Chr5 29561852 29570733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0902 110 397 Core Cell Cycle Gene Families AT1G76540 29.450 2.30e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Gso5g0902 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0902 K03097 - gmx:100819679 819.69