Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0892 ATGACGCAATTCACACCCTCACTTCCTCCCTTGCACCACCAAATCACACCCCTCCTCCAAAACCCTAACATAATGAACAAAAACCAAATCCCTAGGCCTAGGCCTTGGCCTGCAGCATGCTTCCCTACTACCTCCAAGGCCCTCTCCAACTTCGGCGACGCTAACTGCATGGAACAGTTGCTTGTTCACTGCGCCAACGCTATTGAAACCAACGACGTAACCCTCGCACAACAGATCCTTTGGGTGCTCAACAACATAGCTCCCCCTGATGGTGACTCCAACCAACGCCTCGCCTCTGGCTTCCTCCGCGCCCTCACCGCACGTGCCGCCAAAACCGGCACGTGCAAGATGCTCGTCCCCGCCGGCGGCACCAACCTCTCCATTGACACGCACAGATTCAACGTCATTGAGCTCGCTAACTTCGTCGACTTAACCCCGTGGCACCGCTTCGGCTTCACCGCCGCCAACGCCGCCATCCTAGAGGCCACTGAAGGGTTCTCCGTGATCCATATTGTCGACCTAAGCTTGACGCATTGCATGCAAATTCCCACACTTGTCGACGCCATCGCCAGCCGCAACTACCACGAGGTGCCGCCGCCGATAATCAAGCTCACGGTGGCGGCGGACGCTAGCTTCAGGGACAACATCCCTCCCATGCTCGACCTCTCCTACGACGAACTCGGAGCCAAGCTGGTGAATTTCGCCCGGTCTAGAAACATGGTCATGGAATTCAGAGTGGTTTCTTCGAGTTACCGAGACGGGTTCGCGGGTTTGATCGAACATTTAAGAGTGCAACAACAACATTTTGTTTATGCAGCAGAATCTCGTACTACTCCGAGTGAGGCTTTGGTTATAAACTGTCACATGATGCTTCATTACATCCCCGATGAAACCCTATCTGATACAACAGGCTTGACCTCTTTTCTCTACGATTCTTCTTCTCTTGCTGCTTCTTCTGCTGTTAGCGTTACTCCCACTTCCTCACTGCGATCATTGTTCCTTAAGTCCCTGCGAGGTTTAGACCCAACGGTCGTAATCTTGGTCGACGAAGATGCGGATTTGACTTCGAACAACTTGGTATGCAGACTAAGATCCGCGTTTAACTACCTATGGATCCCTTACGACACAGTGGACACGTTCTTGCCGCGAGGGAGCAAGCAGAGGCAGTGGTACGAGGCAGACATATGCTGGAAGATTGAGAATGTGATTGCACACGAAGGGGTTCAGAGAGTTGAGCGGGTTGAGCCTAAGAACAGGTGGGAGCAGCGAATGAAGAATGCGAGCTTTCAAGGAGTTGCTTTCAGTGAAGACTCTGTAGCAGAAGTGAAGGCCATGCTCGATGAACATGCTGCTGGGTGGGGATTGAAGAAGGAAGATGAACACATTGTGCTCACTTGGAAAGGACACAATGTGGTCTTCGCCTCTGCTTGGTTACCTGCTTGA 1443 0.5246 MTQFTPSLPPLHHQITPLLQNPNIMNKNQIPRPRPWPAACFPTTSKALSNFGDANCMEQLLVHCANAIETNDVTLAQQILWVLNNIAPPDGDSNQRLASGFLRALTARAAKTGTCKMLVPAGGTNLSIDTHRFNVIELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLVDAIASRNYHEVPPPIIKLTVAADASFRDNIPPMLDLSYDELGAKLVNFARSRNMVMEFRVVSSSYRDGFAGLIEHLRVQQQHFVYAAESRTTPSEALVINCHMMLHYIPDETLSDTTGLTSFLYDSSSLAASSAVSVTPTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGVQRVERVEPKNRWEQRMKNASFQGVAFSEDSVAEVKAMLDEHAAGWGLKKEDEHIVLTWKGHNVVFASAWLPA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0892 480 ProSiteProfiles GRAS family profile. 48 478 IPR005202 -
Gso5g0892 480 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 478 IPR005202 -
Gso5g0892 480 PANTHER SCARECROW-LIKE PROTEIN 32 31 478 - -
Gso5g0892 480 Pfam GRAS domain family 57 477 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0892 Gso-Chr5 29378542 29381130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0892 24 479 GRAS Transcription Factor Family AT3G49950 55.628 3.19e-177 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso5g0892 GRAS 3.6e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0892 - - gmx:100814364 959.133