Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0885 ATGACACCGGCAAGAAAGAAAATCGTGAAGTTCAATGCAACAGAACTAATCATCTCAATATATGCACTGAAAAGTGGAATGACATGCGTTGTCCAGCTCTCTTTGTTGGGTTCAATATTGTCCAATATGTTACTGGTGCTTGGGTGTGCATTCTTATGTGGTGGGATTGTTAATCACGAGAAGGAGCAAGTGTTTAACAAGGCAGCTACTTCCGTGAACTCAAGATTATTGCTAATGGCAGTCATGGGCATACTTTTTCCTGCTGTTCTACACTACACTCACAGTGAGGTCCATGTTGGGAAGTCAGAGTTGTCACTTTCAAGATTCAGCAGCTGCATTATGCTTGTGGCTTATGTTGCATACCTATTTTTTCAGTTAAAAAGTCAAAGAAATCTCTACGTCTCTGTGAACGAGGGAGCATCTATGGCATGGGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGGAAGGAACTGCTAATTACTTCAAAGGACTAATGCTTATTCTTTGCTATCTGATAGTGGCAACCAATTTTTATGTACATCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTGGCAGCCGGCAGGTCTTTGGCAACAAGCTCTTTTGATGGCCTCTGCTGCTTATAA 768 0.4115 MTPARKKIVKFNATELIISIYALKSGMTCVVQLSLLGSILSNMLLVLGCAFLCGGIVNHEKEQVFNKAATSVNSRLLLMAVMGILFPAVLHYTHSEVHVGKSELSLSRFSSCIMLVAYVAYLFFQLKSQRNLYVSVNEGASMAWEIPVAFISVILLPLVGNATEHASAIMFAMKDKLDISLGVAIGSSTQISMFVEGTANYFKGLMLILCYLIVATNFYVHPAGWLFYLLMIGTHIYLAAGRSLATSSFDGLCCL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0885 255 Gene3D - 11 255 IPR044880 -
Gso5g0885 255 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 12 138 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gso5g0885 255 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 136 195 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gso5g0885 255 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 196 221 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gso5g0885 255 Pfam Sodium/calcium exchanger protein 12 126 IPR004837 GO:0016021|GO:0055085
Gso5g0885 255 Pfam Sodium/calcium exchanger protein 140 234 IPR004837 GO:0016021|GO:0055085
Gso5g0885 255 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 196 221 - -
Gso5g0885 255 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 12 138 - -
Gso5g0885 255 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 136 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0885 Gso-Chr5 29024335 29030183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0885 12 221 Antiporters AT3G13320 56.122 1.51e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0885 K07300 - gmx:100804380 498.819