Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0876 ATGTCTCGGAGCCACCAAGAGCAGCCACTATTAGCGGACTCGTTCATAGAAGAAGACGAGGCGCAAGAGACAGCCTACGACTCCTCCGAGAAGATTGTGGTGGTTGGAGTGGACGAGTCCGACAACGAGGACAATTGGGGGAGAGTACCCCCATTCTCGTGGAAGAAGCTATGGCTGTATACAGGGCCGGGCTTTCTGATGAGCATAGCGTTTCTGGATCCCGGGAACCTGGAGGGGGACCTTCAGGCGGGCGCCATTGCCGGGTACTCGCTGCTGTGGCTTCTGATGTGGGCCACGGCCATGGGCCTCCTGATCCAGCTCCTCTCGGCACGGCTCGGCGTGGTCACTGGGAAGCACCTCGCCGAGCTCTGCCGAGAGGAATACCCTCCGTGGGCTCGGAGAGTGCTCTGGATCATGGCAGAGCTCGCTCTCATTGGCTCCGATATTCAGGAGGTTATTGGGAGTGCTATTGCTATTAGGATTCTTAGTCATGGGGTTGTGCCCCTTTGGGCCGGGGTCGTCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGACATTGGAAGCTTTTTTTGCTGTTCTCATTGGTGTGATGGCAATCTCATTTGCATGGATGTTTGGTGAAGCCAAGCCCAGTGGCAAGGAACTTCTTCTTGGCGTTTTGATTCCGAAACTCAGCTCCAAAACTATACAGCAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCTCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCAAGAAGCTCTTAATTATTACTCTATAGAGTCCACCCTTGCCCTTGTAGTCTCCTTTATCATAAATATATTTGTAACAACAGTGTTTGCTAAGGGGTTTTATGGTTCTGAACTTGCAAACAGCATTGGCCTTGTAAATGCTGGACAGTATCTTGAGGAGACATATGGGGGTGGACTATTTCCAATTTTATACATATGGGGTATTGGATTATTAGCAGCAGGCCAAAGTAGCACTATTACAGGTACTTATGCTGGACAATTCATCATGGGAGGTTTTCTAAACTTAAGGTTAAAGAAGTGGATGAGAGCATTGATCACCCGAAGTTGTGCAATATTTCCAACCATGATAGTTGCTCTTATATTCGATACCTCGGAAGAATCGTTAGATGTTTTGAATGAGTGGCTTAATGTTCTTCAGTCAGTCCAGATCCCCTTTGCACTCATTCCCTTGCTTTGTCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGTGCTGTCCTCAAGACTACTTCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAACGGCTATCTTTTGACGGAATTCTTTTCCTCTGAAGTGAATGGACCAATGATTGGCGCTGTAGTGGGTGCAATAACTGCTGCATATGTTGCATTCATAATATACCTTATTTGGCGAGCCATCACATATTTACCTTGGCAAAGTGTAACACAACCAAAGACAATTGCTCACTCAGCGGGTTGA 1551 0.4771 MSRSHQEQPLLADSFIEEDEAQETAYDSSEKIVVVGVDESDNEDNWGRVPPFSWKKLWLYTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVVTGKHLAELCREEYPPWARRVLWIMAELALIGSDIQEVIGSAIAIRILSHGVVPLWAGVVITALDCFIFLFLENYGVRTLEAFFAVLIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSKTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYGSELANSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIFPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIGAVLKTTSWLVAALVIVINGYLLTEFFSSEVNGPMIGAVVGAITAAYVAFIIYLIWRAITYLPWQSVTQPKTIAHSAG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0876 516 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 13 513 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 Hamap Divalent metal cation transporter MntH [mntH]. 43 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso5g0876 516 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 13 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0876 Gso-Chr5 28901396 28906304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0876 1 502 Inorganic Solute Cotransporters AT2G23150 76.436 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0876 K21398 - gmx:100812381 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0876 5 28901396 28906304 Gso17g1400 17 14867071 14871675 GST
Gso1g1639 1 53053241 53056813 Gso5g0876 5 28901396 28906304 PCT
Gso11g0441 11 3875042 3878426 Gso5g0876 5 28901396 28906304 PCT
Gso5g0876 5 28901396 28906304 Gso1g1639 1 53053241 53056813 PCT
Gso5g0876 5 28901396 28906304 Gso11g0441 11 3875042 3878426 PCT