Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0872 ATGACCTTCATAAGGGAGGAATATGATCAAGTTGATGATCATGGATCACAAAACAATGCCAACAACAACACTGAAATTGTGACCACCCCAGAAGGGGAAAACATGGGAGAATGGCTTAGTCTAGGCCTCACAGGAGACATCAACATGCCTGTAGAAGCAGCAGCAGAACAAAACTTATCATCAAGGCCTCTCCACAACAAGGAATTCTCATGCAACTTCTGCATGAGAAAGTTTTACAGCTCACAAGCCTTAGGGGGTCACCAGAATGCACACAAGAGGGAGAGAGAAGCTGCTAGAAGCTACCACCAATCTCATCATCACAGAATGGGGCTTGCTTACACTTCTCTGGCATCTAGGTCACTGGGAATTCAGCCTCACTCTCTTGTGCACAAACCTAACAGAGAAAGGTCTGCTATGGTGGCTAGATTCAGTAGTAATGATGCCAATAATGGGGTTGGAATTGGATCAGTGGCATCATCATGGACACCCTTTATGCTTGAACAAGCTGTGGATTTGTATTGGCCAGGTAGCTTTCGGGTGGACTTGCCAAAGCAAGAATCATCAGATGTTAAGAAGATTGACTTAGATCTTCGGCTCTGA 600 0.4517 MTFIREEYDQVDDHGSQNNANNNTEIVTTPEGENMGEWLSLGLTGDINMPVEAAAEQNLSSRPLHNKEFSCNFCMRKFYSSQALGGHQNAHKREREAARSYHQSHHHRMGLAYTSLASRSLGIQPHSLVHKPNRERSAMVARFSSNDANNGVGIGSVASSWTPFMLEQAVDLYWPGSFRVDLPKQESSDVKKIDLDLRL* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0872 199 Gene3D Classic Zinc Finger 54 117 - -
Gso5g0872 199 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 199 - -
Gso5g0872 199 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 199 - -
Gso5g0872 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Gso5g0872 199 SUPERFAMILY beta-beta-alpha zinc fingers 65 96 IPR036236 -
Gso5g0872 199 MobiDBLite consensus disorder prediction 1 23 - -
Gso5g0872 199 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0872 Gso-Chr5 28655103 28656189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0872 69 190 C2H2 Transcription Factor Family AT1G24625 44.275 1.27e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0872 - - gmx:100795890 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0872 5 28655103 28656189 Gso17g1404 17 15057352 15058615 GST