Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0859 ATGAACTCAAGCTCCAATCTCAAAATGGAAGCAATTTCTTATTCAATCCCCTCCACCAAATTGCACTCCTCTCTTCATATTTACACGGGCGTTACACGAATTCGATCCTCTAACCTCCTTCTTCGCCCTCCCCCTATTTCAATTAAACCTCTATATTCCCCCAATTTTCTCATTCTCCATCGCCACAGACTTCGCTGCGTCGCAGAATCCTCCAATAATCACCACCACAATCATCATCACGACCATGACCACGGTCACAACCACCACCATCACCATCACCATCACCACTCACACGGCATCCACGGCGCTGATCTCACCGGCCCTCAAAAAGCTGTCATCGCGTTCGCGAAAGCCACCAGATGGATGGACCTGGCAGACATCCTGAGGGAGCACCTGCATCTATGCTGCTTCTCCACCGCTCTATTCGTAGCCGCCGCAATTTGCCCTCACACCTTGCCTAAGCCACTTATCAAGCCTCTTCAAAACTCTCTCATCTTCGTCGCCTTTCCTCTGGTTGGGGTTTCTGCATCACTTGACGCTCTCCTTGAAATCAGCAGTGGAAAGGTGAACATCCATGTGCTAATGGCAATGGCAGCCTTTGCGTCGATATTCATGGGAAACTCTTTGGAAGGAGGCTTGCTTCTTGCCATGTTTAACCTCGCGCATATCGCCGAAGAGTATTTCACCAGCCGGTCGATGGTTGATGTTAGGGAATTGAAGGAAAATAATCCAGATTTCGCCCTTGTTCTGGATACCAATGATGATAAACTCCCCAATACGTTTGACTTGGCGTACAAGAGGGTTCCCGTGCATGATGTAACTGTAGGATCATATATTCTGGTTGGCGCTGGTGAGTCTGTGCCAGTAGATTGTGAAGTATTCCAAGGAAGTGCCACAATTACCACCGAGCACTTGACAGGGGAAGTCAAACCTTTGGAAGCCAAAGTTGGAGATAGAATTCCTGGTGGTGCAAGGAACTTAGATGGGAGGATAATCGTGGAGGTAACCAAAACTTGGAAGGAATCAACTCTCAGCAGAATTGTTCAGTTGACTGAAGAAGCACAGTCAAATAAACCTAAACTTCAAAGGTGGCTTGATGAATTTGGTGAACGCTATAGCAAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTATTGGGCCATTTTTATTTAAGTGGCCATTCATTAGTACATCTGCTTGCAGAGGTTCAATTTACAGAGCCTTAGGGCTTATGGTGGCAGCATCCCCTTGTGCCTTGGCTGTGGCCCCATTGGCATATGCTATAGCAATCAGCTCCTGTGCCAGAAAGGGGATATTACTCAAAGGTGGGCATGTTCTGGATGCTCTAGCTACTTGTCATACTGTTGCCTTTGACAAAACAGGGACATTGACAACTGGTGGACTCGTATTCAAGGCAATTGAGCCCATTTATGGTCATCATGTTAGAAACAATAAATCAAATGTTCCTTCCTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGTACTACTCACCCTATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTTCTGTTGAAAGTTTCGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAACTGGAGGTGCTAAACTATTGAAAGCATCACTTGGATCTATAGATTTCATCACCTCTTTTTGTCAATCTGAAGTCGAGTCAGAAAAGATCAAGGAAGCTGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGATAGGCCTCGTCCTGGGGTTTCTAATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTTCGTGTGATGATGTTAACTGGTGATCATGAGTCTAGTGCAAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTCATTGCAACCTGAAGCCTGAAGACAAGCTGAGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGCATCAATGATGCCCCAGCACTAGCTGCTGCAACTGTTGGGATAGTTCTTGCTCACCGTGCTAGTGCAACTGCCATAGCTGTTGCAGATGTATTGTTGCTTAGAGAAAACATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGTCAAACAACTTCACTGATTAAACAAAATGTGGCTTTAGCATTGACGTCCATTGTCATGGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCTTGCTTGTCTGTCTTAATTCTGTACGTGCTCTGAATGAACCATCTTGGTCCTGGAAGCATGATATATCACATTTGATTAGCGAGATTAAATCTAGACTCCTCTCTCTCAAGACAAATATCACGGGCTCAAACAGTATCATGACGGCGAATTTGTAA 2496 0.4479 MNSSSNLKMEAISYSIPSTKLHSSLHIYTGVTRIRSSNLLLRPPPISIKPLYSPNFLILHRHRLRCVAESSNNHHHNHHHDHDHGHNHHHHHHHHHSHGIHGADLTGPQKAVIAFAKATRWMDLADILREHLHLCCFSTALFVAAAICPHTLPKPLIKPLQNSLIFVAFPLVGVSASLDALLEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVRELKENNPDFALVLDTNDDKLPNTFDLAYKRVPVHDVTVGSYILVGAGESVPVDCEVFQGSATITTEHLTGEVKPLEAKVGDRIPGGARNLDGRIIVEVTKTWKESTLSRIVQLTEEAQSNKPKLQRWLDEFGERYSKVVVVLSIAIAVIGPFLFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALATCHTVAFDKTGTLTTGGLVFKAIEPIYGHHVRNNKSNVPSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSISVESFEYFPGRGLTATVNSIESGTGGAKLLKASLGSIDFITSFCQSEVESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVSNVIQELQDEAKFRVMMLTGDHESSARRVASAVGINEFHCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIVMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDISHLISEIKSRLLSLKTNITGSNSIMTANL* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0859 831 Gene3D - 450 738 IPR023214 -
Gso5g0859 831 SUPERFAMILY Calcium ATPase, transmembrane domain M 193 772 IPR023298 -
Gso5g0859 831 ProSitePatterns E1-E2 ATPases phosphorylation site. 459 465 IPR018303 -
Gso5g0859 831 SFLD Haloacid Dehalogenase 439 740 - -
Gso5g0859 831 PRINTS P-type cation-transporting ATPase superfamily signature 301 315 - -
Gso5g0859 831 PRINTS P-type cation-transporting ATPase superfamily signature 457 471 - -
Gso5g0859 831 PRINTS P-type cation-transporting ATPase superfamily signature 610 621 - -
Gso5g0859 831 PRINTS P-type cation-transporting ATPase superfamily signature 633 643 - -
Gso5g0859 831 PRINTS P-type cation-transporting ATPase superfamily signature 687 706 - -
Gso5g0859 831 PRINTS P-type cation-transporting ATPase superfamily signature 711 723 - -
Gso5g0859 831 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 587 767 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g0859 831 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 215 481 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g0859 831 Gene3D - 468 618 IPR023299 GO:0000166
Gso5g0859 831 MobiDBLite consensus disorder prediction 77 99 - -
Gso5g0859 831 Pfam haloacid dehalogenase-like hydrolase 455 700 - -
Gso5g0859 831 SFLD p-type atpase 439 740 IPR044492 -
Gso5g0859 831 SUPERFAMILY Calcium ATPase, transduction domain A 265 350 IPR008250 -
Gso5g0859 831 Pfam E1-E2 ATPase 265 437 - -
Gso5g0859 831 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 191 789 IPR027256 GO:0006812|GO:0016021|GO:0019829
Gso5g0859 831 SUPERFAMILY HAD-like 455 787 IPR036412 -
Gso5g0859 831 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 60 817 - -
Gso5g0859 831 Gene3D - 229 355 - -
Gso5g0859 831 MobiDBLite consensus disorder prediction 71 103 - -
Gso5g0859 831 CDD P-type_ATPase_HM 141 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0859 Gso-Chr5 28095847 28113142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0859 91 812 Primary Pumps ATPases AT4G37270 76.454 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0859 K01534 - gmx:100776309 1483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0859 5 28095847 28113142 Gso17g1414 17 15213908 15228332 GST