Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0854 CTAGACACAAACGGTCAGTCAAGCCCGGAGCACTACGGATTCCAGACAGAATCAGACAGAGATGGCATCTCCATCTTCGGGCCGAAGGACATATGGATCGACCACTACACCCTTTCACGGTGCAAGGACGGTCTGATCGACGCGGTGATGGGGTCCATAGGGATAACCATCAACAACATGCTCTCCCACCACAACGAGGTCATGCTACTCGGACACAGCGACGACTACCTCCCTGACTCTGGAATGCAGGTCACCATCGCCTTCAACCACTTCGGGGAGAAGCTCGTCCAGCGCATGCCCCGCTGTCGAAGGGGATACATCCACGTCATCAACAACGACTTCACCGAGTGGGAGATGTACGCCATTGGTGGCAGCGGCGAGCCCACCATTAACAGCCAGGGTAACCGTTACATGGCACCGGAAAATCCCTTCGCTAAGGAAGTTACTAAGAGAGTCGACACGCAACAGTCCAAGTGGAAGGGATGGAACTGGCGCTCCGAGGGTGACATTCTCCTCAACGGGGCCTTTTTTGTTGCGTCTGGTGAAGAACTTGAAGTCAACTTCAGCTCTCGAGCTATTCCCCTTAACCACAATGCTTCTTTTATTGCTTCTGTCAAAGCAATATACTTTGCTTCAGTAGTGGACAATGCAACCACCTTCTAA 663 0.5264 LDTNGQSSPEHYGFQTESDRDGISIFGPKDIWIDHYTLSRCKDGLIDAVMGSIGITINNMLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVINNDFTEWEMYAIGGSGEPTINSQGNRYMAPENPFAKEVTKRVDTQQSKWKGWNWRSEGDILLNGAFFVASGEELEVNFSSRAIPLNHNASFIASVKAIYFASVVDNATTF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0854 220 Pfam Pectate lyase 18 132 IPR002022 -
Gso5g0854 220 PANTHER PECTATE LYASE 12-RELATED 2 190 - -
Gso5g0854 220 Gene3D - 2 213 IPR012334 -
Gso5g0854 220 SMART amb_all 1 143 IPR002022 -
Gso5g0854 220 PANTHER PECTATE LYASE 18-RELATED 2 190 IPR045032 GO:0030570
Gso5g0854 220 SUPERFAMILY Pectin lyase-like 15 214 IPR011050 -
Gso5g0854 220 PRINTS Pollen allergen Amb family signature 19 40 IPR018082 -
Gso5g0854 220 PRINTS Pollen allergen Amb family signature 98 117 IPR018082 -
Gso5g0854 220 PRINTS Pollen allergen Amb family signature 120 139 IPR018082 -
Gso5g0854 220 PRINTS Pollen allergen Amb family signature 162 186 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0854 Gso-Chr5 27634611 27640776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0854 2 205 Polysaccharide Lyase AT3G53190 77.561 2.09e-114 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0854 K01728 - gmx:100775595 369.392