Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0849 ATGAAGAAACGTTTTTTTTTTCTTCTCCGAAGAAGAAAAATGGCTCTCGGCGACGATGCGCAGCACCACTCTCACTCTCCCTCGTTCCTCGATTCCCTTCTCTGCGAAGAGCGAGAAACGTTCGAGGAAGACTTTGACGCGAACGGTGACGAGTGCGAGACCGAAAACAACGACCCCTCTGTGATAAAGTCGCAACCTTTGCCCTTGGTTTTGTACGACAATGACCTGTTCTGGGAAGACGACGAGCTCGTGTCGTTAATCGCGAAAGAGGGAGAGACCCATTTGCGTTCTTTTTCTGATGGGGCCCTGGAAGGGCCTCGTGTTGAAGCTGTGAACTGGGTTTCGAAAGTTTCTGGGCACTATGGGTTCTCTGCTTTGACCACTGTTCTTGCTGTTAACTACTTCGATAGGTTCATCACAAGTTTGAAGTTTCAGAGGGACAAGCCGTGGATGACACAGCTCGCTGCTGTTGCTTGTTTGTCCCTTGCTGCGAAAACAGAAGAGACCCATGTGCCACTCCTCTTGGACCTTCAAGTGGAGGAGTCAAGGTTTGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCAACTCTTAAGTGGAGGATGCTTCCGGTGACCCCAATTTCCTTCTTTGAACACATTGTGAGAAGGCTTGGTTTGAAAAGTCGCTTGCATTGGGAGTTTCTGTGGCGTTGTGAGCGGGTTCTTCTCAATATCATTGCGGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCGACAATGATCCATGTTATTAAAGAAATTGAATCATTTAATGCGACTGAGTACATTGATCAGCTTCTGGGTTTACTAAAGATTAGCGAGGAACAAGTGAACAAGTGCTACAGAATCATACAGAAACTATTAGGTTGCCATGAAGGCATTTACGGCCTTCCCCAGAAATGCAAGCGACTATCTGAATTGGGTAGCCCGAGTGCTGTTACTGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGGCCGTGTCATCATCAGTCTCACTTTCACTGGAGCCGCAGTTGAAGAGGAGAAGATCTCAGGACCAGCAAATGCGATTGCCTTCTGTTAGTCGTGTGTCAATTGATGTTCTTAATAGCCCTCATTAA 1152 0.467 MKKRFFFLLRRRKMALGDDAQHHSHSPSFLDSLLCEERETFEEDFDANGDECETENNDPSVIKSQPLPLVLYDNDLFWEDDELVSLIAKEGETHLRSFSDGALEGPRVEAVNWVSKVSGHYGFSALTTVLAVNYFDRFITSLKFQRDKPWMTQLAAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMLPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNIIADSRVMSYLPSTLAAATMIHVIKEIESFNATEYIDQLLGLLKISEEQVNKCYRIIQKLLGCHEGIYGLPQKCKRLSELGSPSAVTDASFSCDSSNDSWAVSSSVSLSLEPQLKRRRSQDQQMRLPSVSRVSIDVLNSPH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0849 383 Pfam Cyclin, N-terminal domain 107 206 IPR006671 -
Gso5g0849 383 Gene3D - 107 207 - -
Gso5g0849 383 SMART cyclin_7 112 200 IPR013763 -
Gso5g0849 383 Gene3D - 208 297 - -
Gso5g0849 383 Pfam Cyclin, C-terminal domain 209 304 IPR004367 -
Gso5g0849 383 CDD CYCLIN 107 199 IPR013763 -
Gso5g0849 383 PANTHER CYCLIN-D3-2 19 366 - -
Gso5g0849 383 PANTHER CYCLINS 19 366 IPR039361 -
Gso5g0849 383 SUPERFAMILY Cyclin-like 78 206 IPR036915 -
Gso5g0849 383 SMART Cyclin_C_2 209 336 IPR004367 -
Gso5g0849 383 SUPERFAMILY Cyclin-like 210 305 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0849 Gso-Chr5 27502647 27504520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0849 14 373 Core Cell Cycle Gene Families AT5G67260 53.333 1.70e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0849 K14505 - gmx:100805075 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0849 5 27502647 27504520 Gso17g1420 17 15457021 15458936 GST
Gso5g0849 5 27502647 27504520 Gso1g1631 1 52979225 52981407 PCT
Gso5g0849 5 27502647 27504520 Gso11g0451 11 3991134 3993275 PCT