Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0840 ATGGCCGTGGACCTCATGACGACGGGTTGCAGCCGAAACGACAACATCAATAGTTTCACAACCAAAGCCGAGGAAAATGCCGTCCAAGAAGCTGCTTCCGGCTTAGAGAGCATCGAGAAGCTCATCAGACTCCTCTCGCAAACCCAAACCCAAACCCGCCATCAAATCAACAACAATAGCTCTAATGAAATCGCCATCGCCATGGACTGCAAGGTCGTCGCTGACGTGGCAGTCTCCAAGTTCAAGAAGGTCATATCCCTCCTCGGCCGAACCCGTACCGGCCACGCCAGGTTCCGACGCGCCCCTCTCCCCAACCAAAACCAACACACTCAACCTCCCTCCGAACCACCCGTGTTCCACGCTACGCCGCTGCACCAGATCCCACCACCCTCCCTTCACCAAATTCCCAAAACTGAAAGGAACCTTAACGATTCCTCCTCTTCTAAAACCATTCATTTCTCATACCCCTCCGCCGCTACCTCCTTCATCTCCTCCCTCACCGGCGACGGCGCCGCCGACAACAAACAACCTTCCTCGTCGCCGCCCGCGGCGGCGGCGACGACGACGCCCTTTCAGATCACGAGCCTCTCGCACGTGTCGTCCGCGGGGAAGCCTCCGCTTTCGACTTCCTCTTTCAAGAGAAAGTGCAGCTCTGAGAATTTAGGCTCTGGAAAATGCGGTAGCTCCTCCAGCCGCTGTCATTGTTCCAAAAAGAGTAGGAAAATGAGGTTGAAGAGGGTAGTGAGGGTACCGGCTATAAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAGTATGGACAGAAACCAATTAAAGGATCACCTCATCCAAGGGGTTACTACAAGTGCAGTAGTGTGAGAGGGTGTCCAGCGCGAAAACATGTGGAACGAGCTTTGGATGATCCAGCTATGCTGGTGGTAACCTACGAGGGAGAGCACAATCACACTCTCTCTGCTGCTGATGCTACTAATCTCATTCTAGAATCGTCTTGA 1005 0.5323 MAVDLMTTGCSRNDNINSFTTKAEENAVQEAASGLESIEKLIRLLSQTQTQTRHQINNNSSNEIAIAMDCKVVADVAVSKFKKVISLLGRTRTGHARFRRAPLPNQNQHTQPPSEPPVFHATPLHQIPPPSLHQIPKTERNLNDSSSSKTIHFSYPSAATSFISSLTGDGAADNKQPSSSPPAAAATTTPFQITSLSHVSSAGKPPLSTSSFKRKCSSENLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHNHTLSAADATNLILESS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0840 334 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 19 334 - -
Gso5g0840 334 MobiDBLite consensus disorder prediction 197 234 - -
Gso5g0840 334 MobiDBLite consensus disorder prediction 96 149 - -
Gso5g0840 334 Pfam Plant zinc cluster domain 213 259 IPR018872 -
Gso5g0840 334 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 334 IPR044810 GO:0003700
Gso5g0840 334 Pfam WRKY DNA -binding domain 263 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g0840 334 SUPERFAMILY WRKY DNA-binding domain 258 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g0840 334 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g0840 334 MobiDBLite consensus disorder prediction 197 233 - -
Gso5g0840 334 Gene3D WRKY domain 246 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g0840 334 SMART WRKY_cls 261 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0840 Gso-Chr5 27063748 27065918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0840 24 319 WRKY Transcription Factor Family AT2G24570 44.444 7.14e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso5g0840 WRKY 4.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0840 - - gmx:100170685 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0840 5 27063748 27065918 Gso17g1426 17 15607512 15609619 GST
Gso5g0840 5 27063748 27065918 Gso1g1625 1 52933084 52935024 PCT
Gso5g0840 5 27063748 27065918 Gso11g0456 11 4031654 4033329 PCT