Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0836 ATGTCGCAGCAGCAGCGTTCGATGCCGGCGCCGTTTTTGACGAAATCGTATCTGTTGGTGGATGATCCCGCCACCGACGACGTCGTTTCGTGGAGCGAAGGTGGCAACACCTTTGTCGTTTGGAAACACGCCGATTTCGCTAATGATTTGCTCCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGATTCCGAAAAACTGTTCCCGACAAATGGGAATTCGCCAACGAGTATTTCAAGCGAGGACAAAAGGATCTTCTCGCCGAGATCAAGCGGCGGAAGACGGTGTCTTCGGTGTCCGGAAAATCCGGCAGTGGCGGTAACATTTCGGCGTCCCACTCCGGCGGCGATGACATGGGGTCGACATCGACGGGGTCGATGGAGGCGGCGACGGCGACAGTAACAACGACTCAGTGCGCGGATTTATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGACGAGTTAGCCCGCACGAAGAAACATTGCGACGATTTGGTGGCGTTTCTTAGAGACTCGCTGAACGTGGGCCCCGATGTGATAGATTGCATCATTCGGCAAGGAACGTGTGGGTCCAGCAACGATGATGCGGTGCGTTTTGATGCTACTGAAAATCTTAATAATCATAATCATGATGACGACGAAAATGCGGTAGGTGAGTGTGAACCAGAACAACCCAAAGGTGACAATGGAGAAAGTTTGAAACTGTTTGGGGTTTGGTTGAAGGGTCAAAATGGGAAAGAGAATTCAATTGGTAGCTGCCGCAAGAGAGGGCGCCAAGACCCTATTGCTGCCACTGCCAAGGAATTGAAGACCCTTGTCTAG 861 0.5145 MSQQQRSMPAPFLTKSYLLVDDPATDDVVSWSEGGNTFVVWKHADFANDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDKWEFANEYFKRGQKDLLAEIKRRKTVSSVSGKSGSGGNISASHSGGDDMGSTSTGSMEAATATVTTTQCADLSGENEKLKKDNEKLSDELARTKKHCDDLVAFLRDSLNVGPDVIDCIIRQGTCGSSNDDAVRFDATENLNNHNHDDDENAVGECEPEQPKGDNGESLKLFGVWLKGQNGKENSIGSCRKRGRQDPIAATAKELKTLV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0836 286 MobiDBLite consensus disorder prediction 219 245 - -
Gso5g0836 286 Coils Coil 147 174 - -
Gso5g0836 286 MobiDBLite consensus disorder prediction 105 135 - -
Gso5g0836 286 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g0836 286 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 4 268 - -
Gso5g0836 286 MobiDBLite consensus disorder prediction 219 241 - -
Gso5g0836 286 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 268 IPR027725 -
Gso5g0836 286 Gene3D - 4 103 IPR036388 -
Gso5g0836 286 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g0836 286 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g0836 286 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g0836 286 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Gso5g0836 286 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0836 Gso-Chr5 26808683 26812651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0836 1 261 HSF AT4G36990 51.515 1.62e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso5g0836 HSF_DNA-bind 2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0836 K09419 - gmx:100801897 549.28