Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0829 ATGGATGTGGACATAGTGAAAACTTCCAGCAACAACAACAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTATTCTGCGACCCTTTTTATACCACCTCTTACCAAGAAACCGATTTGTTATCAAGTGGAAGTTCCTCAACAACCAGTGCTTCCACCCTATTCAACAACAACAGCATTGTAACAACAACTCCACCACCGACGACGACTCTCGTCGATCCAACTCCGTCAAATGTTGTCCAATTTTCCAAAATCGATGACCTTTTCCAACACCAACACCAACAACAACCTATGTCACAGTCCCTTCAACCCTACCCTTCCGAGAAGAAGAACTCGATGGCGGCGATGAGGGAGATGATATTCCGAATAGCGGTTATGCAGCCCGTTCACATCGATCCTGAATCCATAAAGCCACCCAAGAGAAGGAACGTGAAGATCTCCAAGGATCCGCAGAGCGTGGCGGCGCGGCACAGAAGAGAAAGGATAAGCGAGAGAATAAGGATTCTTCAGAGATTGGTCCCTGGCGGCACCAAGATGGACACTGCTTCTATGTTGGACGAGGCCATTCACTACGTCAAGTTCTTGAAGAAACAGGTGCAGACGCTGGAGCAAGCAGGGGCAAATACGTCACCACACAGTAATACTAATAGTCCCAATAATCACGTTGTTGGTGCTGCTGGTTTTCCGCTAGGGATGTCTTCTAACTACTCCAATAATAGTAGTGTTAATTATTCTTCTTTGTTGATGAAGGGTGGTTGCCAACCTTGTCAAATGTTCGGTTCCACTTCTAAACAATTGCTCAGCTAA 822 0.4586 MDVDIVKTSSNNNNMDVMAMMMQMEKFPELFCDPFYTTSYQETDLLSSGSSSTTSASTLFNNNSIVTTTPPPTTTLVDPTPSNVVQFSKIDDLFQHQHQQQPMSQSLQPYPSEKKNSMAAMREMIFRIAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANTSPHSNTNSPNNHVVGAAGFPLGMSSNYSNNSSVNYSSLLMKGGCQPCQMFGSTSKQLLS* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0829 273 Gene3D - 150 220 IPR036638 GO:0046983
Gso5g0829 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Gso5g0829 273 Coils Coil 190 210 - -
Gso5g0829 273 CDD bHLH_AtIND_like 152 208 - -
Gso5g0829 273 Pfam Helix-loop-helix DNA-binding domain 161 200 IPR011598 GO:0046983
Gso5g0829 273 PANTHER TRANSCRIPTION FACTOR HEC2 1 267 - -
Gso5g0829 273 SMART finulus 157 206 IPR011598 GO:0046983
Gso5g0829 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 211 IPR036638 GO:0046983
Gso5g0829 273 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 267 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0829 Gso-Chr5 26079786 26081039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0829 118 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 89.691 2.90e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g0829 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0829 - - gmx:100800816 448.358