Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0809 ATGTGGGATCTCAACGACTCACCCGATCAGAGGATTAACAAGGACGAGGAATCCGAAGAAGGGTGTTCTTCCCTCAATAAAACTTCCTTCGATGGAGATGATGACAACAACAACAACAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCAAGCTCTTCAGCAGTAGTCATCGGAGACGGGTCAGAAGAAGAGTACGAGGAGGAAGAAGAAGATGAAGAAGGTGTTGGTGTTGGTGGTGGAAGAAGTATGAAGAAACGTAGCAGCAAGATTTTCGGGTTCTCTGTGACCCAAAATGAAGAAGAGTCCATGGACAGTGACCATCCACCTGTGACTAGACAATTTTTTCCGGTGGAAGATGCTGACGTGGCGGTTGCAACCGGTGGTGGTGGAACCGGTGTAAGCTCAACGTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGCCAATCAGAAACACTTGGCACCGGAAAATCATCAGTGGAAGTTTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCGAGGTCAAGGAGCTCTCAGTATAGAGGAGTCACCTTCTACAGAAGAACGGGTCGCTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGTGCATATGATAGAGCGGCTATTAAATTCCGAGGAGTGGAGGCGGACATTAACTTCAACATTGAAGATTATGAAGATGACTTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTGCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGAGGGAGTTCCAAGTATCGAGGTGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTCGACACTGAGATCGAAGCTGCAAGGGCTTATGACAAAGCTGCCATAAAATGCAACGGCAAAGAGGCGGTAACAAATTTTGATCCCAGCATCTATGACAATGAGCTCAATTCCGCAGAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATTCAACTTCAAACCCTGGCAACGATCAAGCGTTGGGGAATCAAGCCCCAAATGCTGTAACCCATGATCAGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACACATGGAAGGGATGTGCACGGGGAGAGTGAAACACTGAGGATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTTCAATGAAATGCAACAAAGATATGGTCCCTACAGGTCTCCGGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAGTGGCTGATCAACAACAGTGGCAAACCGGGCCTTCACGTTATTTAGCAACTGCTGCAGCATCATCAAGTTTCCAACAAGAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGCTCCACAGTCTCATGAGACCCTCATGA 1605 0.4692 MWDLNDSPDQRINKDEESEEGCSSLNKTSFDGDDDNNNNKGKRVGSVSNSSSSAVVIGDGSEEEYEEEEEDEEGVGVGGGRSMKKRSSKIFGFSVTQNEEESMDSDHPPVTRQFFPVEDADVAVATGGGGTGVSSTFPRAHWVGVKFCQSETLGTGKSSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSAESTGNAPDHNLDLSLGNSTSNPGNDQALGNQAPNAVTHDQHMPSESNWRNGGIKPKLVNILPKPCYRSNNKDTHGRDVHGESETLRMLSQTHLHSPAFNEMQQRYGPYRSPGGESQMLQNFAHIHPPNFHFPRSSIGGRIGSDLSLSVADQQQWQTGPSRYLATAAASSSFQQEIRPSSQGWLQKNGLHSLMRPS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0809 534 CDD AP2 270 330 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 Gene3D AP2/ERF domain 178 237 IPR036955 GO:0003700|GO:0006355
Gso5g0809 534 Gene3D AP2/ERF domain 270 329 IPR036955 GO:0003700|GO:0006355
Gso5g0809 534 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 532 - -
Gso5g0809 534 PRINTS Ethylene responsive element binding protein signature 272 283 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 PRINTS Ethylene responsive element binding protein signature 310 330 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 SUPERFAMILY DNA-binding domain 270 330 IPR016177 GO:0003677
Gso5g0809 534 MobiDBLite consensus disorder prediction 335 386 - -
Gso5g0809 534 ProSiteProfiles AP2/ERF domain profile. 179 235 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 MobiDBLite consensus disorder prediction 8 22 - -
Gso5g0809 534 MobiDBLite consensus disorder prediction 156 180 - -
Gso5g0809 534 CDD AP2 179 236 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 MobiDBLite consensus disorder prediction 60 74 - -
Gso5g0809 534 MobiDBLite consensus disorder prediction 1 83 - -
Gso5g0809 534 SUPERFAMILY DNA-binding domain 178 236 IPR016177 GO:0003677
Gso5g0809 534 SMART rav1_2 179 241 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 SMART rav1_2 271 334 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 MobiDBLite consensus disorder prediction 335 392 - -
Gso5g0809 534 Pfam AP2 domain 270 319 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 Pfam AP2 domain 179 227 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 MobiDBLite consensus disorder prediction 41 57 - -
Gso5g0809 534 ProSiteProfiles AP2/ERF domain profile. 271 328 IPR001471 GO:0003700|GO:0006355
Gso5g0809 534 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0809 Gso-Chr5 23755615 23759671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0809 1 367 AP2-EREBP Transcription Factor Family AT4G36920 65.526 1.77e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso5g0809 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0809 K09284 - gmx:100794096 980.704