Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0804 ATGCGTGGGTGCTTTGTTCTCTTAAAGCCGTATGAATTCACAGTGGGAGCTCCACCGGGAAAGGAAAGGAAGCTTCAATTTGTTGACAACCCAAATGGTTTATTCTCTGCTCAAGCAGCACCAAAACCTCCAGCTGCTGTGTTGTTCCTCCTGAGGCATCCTACCTTCATGTTCATGGATAAAGATGCTAATTCAAAAATCCAACTCCCTCCTGGATTTAGATTCCACCCTTCTGATGAGGAGCTAATTGTTCACTATCTGAGAAACAAAGTGACATCATCACCCTTTCCTACTTCATTCATAGCAGAAATAGATCTTTACAACTATAATCCATGGGAGCTCCCAAGCAAAGCTTTGTTTAGGGAGGATGAGTGGTATTTCTTTACTCCTAGAGACAGGAAGTATCCCAATGGAGTGAGGCCTAATAGAGCAGCTGCTTCTGGTTATTGGAAGGCTATTGGGACTGACAAACCCATTTTCACTTCCTGTGGGATAAAGAGCATTGTTGTCAAGAAGGCACTCGTGTTCTACAAGGGTCGTCCACCAAAGGGATCGAAAACCGATTGGATCATGCATGAGTATAGATTGCATGATTCCACAATCTCCAATTCCAAGCAAGGAGGGTCCATGAGATATTGTAAAGTCACCACCGAAGAGGAGACTCTGAAATCAATGATGGCATCGCTGGAAGAAGAAATGGATGAAGAAGAAGAAGTTGAATCGTCACCGGTTCCACCGATGCAGAAGAAAGCACAACCGGTTCAACGATGTTGA 774 0.4419 MRGCFVLLKPYEFTVGAPPGKERKLQFVDNPNGLFSAQAAPKPPAAVLFLLRHPTFMFMDKDANSKIQLPPGFRFHPSDEELIVHYLRNKVTSSPFPTSFIAEIDLYNYNPWELPSKALFREDEWYFFTPRDRKYPNGVRPNRAAASGYWKAIGTDKPIFTSCGIKSIVVKKALVFYKGRPPKGSKTDWIMHEYRLHDSTISNSKQGGSMRYCKVTTEEETLKSMMASLEEEMDEEEEVESSPVPPMQKKAQPVQRC* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0804 257 ProSiteProfiles NAC domain profile. 69 218 IPR003441 GO:0003677|GO:0006355
Gso5g0804 257 MobiDBLite consensus disorder prediction 229 257 - -
Gso5g0804 257 Pfam No apical meristem (NAM) protein 70 196 IPR003441 GO:0003677|GO:0006355
Gso5g0804 257 Gene3D NAC domain 78 223 IPR036093 GO:0003677|GO:0006355
Gso5g0804 257 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 60 227 - -
Gso5g0804 257 Coils Coil 219 239 - -
Gso5g0804 257 PANTHER NAC TRANSCRIPTION FACTOR 56 60 227 - -
Gso5g0804 257 SUPERFAMILY NAC domain 62 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0804 Gso-Chr5 20377726 20380998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0804 62 211 NAC Transcription Factor Family AT1G69490 67.333 7.93e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g0804 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0804 - - gmx:100784947 518.464