Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0798 ATGCATCATCATCCCAAAACGACAACAACAGCAACAAAACTCCGCCCTCTGTTCCTATGCTTCTTCTTGACCCTCGCCTCTTCCGCGCCCCCAATGCTCCCCTCCGACGCGGTTTCGTTGTTGTCGTTTAAGCGTCTAGCGGACCAAGACAACAAGCTCCTCTACTCCCTCAACGAGCGGTACGACTACTGCGAGTGGCAGGGCGTGAAGTGCGCGCAGGGCAGAGTGGTCAGCTTCGTGGCCCAGTCCATGGGCCTGCGAGGCCCATTCCCGCCGCACACTCTCACAAGTCTGGACCAGCTCCGAGTCCTCAGCCTCCGCAACAACTCCCTCTTCGGGCCCATCCCCGATCTAAGCCCACTCGTCAACCTCAAGTCCCTCTTCCTCGACCACAACAGCTTCTCCGGCTCCTTCCCTCCCTCCCTCCTCCTCCTCCACCGCCTCCTCACTCTCTCCCTCTCCCACAACCGCTTCTCCGGTCCCCTCCCCGGAAACGTCACCCTCCTCCACCGCCTCATCGCGCTCCGTCTCAACTCCAACAACTTCTCCGGCACGCTTCCTTCCTTCAACCAGACCACCTTGAAACTCCTCGACCTGTCCTACAACAATCTCACCGGCCCGGTGCCCGTCACCCCGACTCTCGCCAAATTAAATGCACAATCGTTTTCAGGTAACCCCGGTCTCTGCGGGGAGATTGTTCACAAAGAGTGCGACCCTCGTTCACATTTCTTCGGCCCCGCCACGTCATCTTCTACCACCCCCTTGAGCCAGAGTGAACAGTCTCAAGGTATTTTGGTTGTTCCTTCTTCTTCCACCAAAACAAAGCATCATATAAAAACAGGACTTGTTGTTGGGTTTGTCGTTGCGGTTGTTCTTGTAACTGCTTTCACTCTCACAGTGGTTTCTTTGGTGAGAAAGAAACAAAATGGTAAAGCTTTTAGAGCGAAAGGTGTGGTTTTGGAGAGTCCTGAGGTGGAAGGGGGTGGTGTGGTGGTTGCGGTGGAAGGTGAGAGAGAGGTGAAGATGAGGAAGATGGAGGAGGCGCACAGGAGCGGGAAGCTGGTGTTCTGCTGCGGGGAGGTGCAGAGTTACACGCTGGAGATGCTGATGAGGGCTTCTGCGGAGTTTCTGGGGAGGGGGAACGTGGGGACCACCTACAAGGCGGTGATGGATTCGCGGCTGATTGTGACGGTGAAGAGGTTGGACGGAGAGAAAAGCGCGGCAGCGGGGAGTGACGGGGAAGTGTTTGAGAGGCATATGGAGGTTGTGGGGAGGCTGAGACACCCCAATTTGGTGCCTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTTGTTATTTATGATTATCAGCCCAATGGCAGCCTCTTCAACCTCGTTCACGGTTCAAGATCAGCGAGGGCAAAACCATTGCATTGGACATCATGCTTGAAAATAGCAGAAGATGTAGCACAAGGACTTGCTTACATCCATCAAGTTTCATCCTTAATCCATGGCAACCTAAAATCCTCTAATGTCCTTCTTGGGGTGGACTTTGAAGCTTGTATCACGGACTATTGCTTGGCCTTGTTTGCAGATTCTTCGTTCTCCGAAGACCCTGATTCAGCGGCTTACAAAGCACCGGAGGCTCGCAGCTCTAGCCACAAGTGCACTGCTAAGTCTGATGTGTATGCTTTTGGGGTTCTTCTGATAGAGCTTTTGACGGGCAAACACCCTTCCCAACACCCTTTTCTTGCGCCAGCGGATTTGCAAGATTGGGTTAGAGCGATGAGGGACGATGACGGCAGCGAAGACAACCGGCTGGAGATGCTCACGGAGGTTGCCAGTATTTGCAGTGCAACCTCGCCAGAGCAGAGGCCGGTGATGTGGCAAGTGCTTAAGATGATACAAGGAATTAAGGACAGTGCTACAATGGAGGATACTGCACTTACTTGA 1935 0.539 MHHHPKTTTTATKLRPLFLCFFLTLASSAPPMLPSDAVSLLSFKRLADQDNKLLYSLNERYDYCEWQGVKCAQGRVVSFVAQSMGLRGPFPPHTLTSLDQLRVLSLRNNSLFGPIPDLSPLVNLKSLFLDHNSFSGSFPPSLLLLHRLLTLSLSHNRFSGPLPGNVTLLHRLIALRLNSNNFSGTLPSFNQTTLKLLDLSYNNLTGPVPVTPTLAKLNAQSFSGNPGLCGEIVHKECDPRSHFFGPATSSSTTPLSQSEQSQGILVVPSSSTKTKHHIKTGLVVGFVVAVVLVTAFTLTVVSLVRKKQNGKAFRAKGVVLESPEVEGGGVVVAVEGEREVKMRKMEEAHRSGKLVFCCGEVQSYTLEMLMRASAEFLGRGNVGTTYKAVMDSRLIVTVKRLDGEKSAAAGSDGEVFERHMEVVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSLFNLVHGSRSARAKPLHWTSCLKIAEDVAQGLAYIHQVSSLIHGNLKSSNVLLGVDFEACITDYCLALFADSSFSEDPDSAAYKAPEARSSSHKCTAKSDVYAFGVLLIELLTGKHPSQHPFLAPADLQDWVRAMRDDDGSEDNRLEMLTEVASICSATSPEQRPVMWQVLKMIQGIKDSATMEDTALT* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0798 644 ProSiteProfiles Protein kinase domain profile. 371 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0798 644 PANTHER LRR RECEPTOR-LIKE KINASE 3 642 - -
Gso5g0798 644 SUPERFAMILY L domain-like 32 230 - -
Gso5g0798 644 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 642 - -
Gso5g0798 644 Pfam Protein kinase domain 375 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0798 644 Gene3D Phosphorylase Kinase; domain 1 336 450 - -
Gso5g0798 644 Gene3D Ribonuclease Inhibitor 191 241 IPR032675 -
Gso5g0798 644 Gene3D Transferase(Phosphotransferase) domain 1 452 643 - -
Gso5g0798 644 SUPERFAMILY Protein kinase-like (PK-like) 375 634 IPR011009 -
Gso5g0798 644 Gene3D Ribonuclease Inhibitor 34 190 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0798 Gso-Chr5 20173812 20177937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0798 32 640 Receptor kinase-like Gene Family AT3G50230 53.323 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso5g0798 Pkinase 4.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0798 - - gmx:100786526 1197.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0798 5 20173812 20177937 Gso17g1430 17 15670384 15674429 GST