Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0787 ATGACGTGTCGGTTGGCTTCGAAGTTTGGAATAAATTTGCGACAGACGGTTTTGGAGTTCGCCACAACAATAACCTGCCCTAAGACACAGCAGACACTTGTGCATACAGCCCTTACCCCTAACTATGTTTTGAAGAGTTTGATTGCTTTGTGGTGTGAAAGCAACGGTATTGAGCTACCAAAGAAGCAAGGGAACTGTAGAACAAAGAAATGTGGTGGCAGCAGTCTTTCAGATTGTGATCGAACTGCTATTGGTGCTTTATTGGATAAACTAACGAGTAACGATATAGAACAGCAAAGGGCAGCTGTTGGTAAGAAGGATGCTGCTACTGCTCTAATAAAGTTACTTTGTGAAGGTACTCCTACAGGTAAGAAGGATGTTGCTACTGCTATCTTCAACCTATCTATTTATCAGGGAAATAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGCCCCACTGATACAATTTCTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATTATGGCAATCCTTGCAAGCCACCATGAAGGCAGGGTAGCGATCGGTCAGGCCAAGCCAATTCATATTCTTGTTGAGGTTATACGAACCGGCTCTCCATGCAATCGAGAGAATGCTGCTGCTGTCTTGTGGTCACTATGCACCGGAGATCCACTGCAATTAAAACTAGCGAAAGAACATGGTGCAGAAGCAGCACTGCAGGAGTTGTCAGAAAATGGAACTGATAAAGCTAAGAGAAAAGCTGGAAGCATATTGGAACTCTTGCAGCGAATGGAAGGGGTTGATAATCTGCAGAGTTCATAG 813 0.4416 MTCRLASKFGINLRQTVLEFATTITCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGNCRTKKCGGSSLSDCDRTAIGALLDKLTSNDIEQQRAAVGKKDAATALIKLLCEGTPTGKKDVATAIFNLSIYQGNKARAVKAGIVAPLIQFLKDAGGGMVDEALAIMAILASHHEGRVAIGQAKPIHILVEVIRTGSPCNRENAAAVLWSLCTGDPLQLKLAKEHGAEAALQELSENGTDKAKRKAGSILELLQRMEGVDNLQSS* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0787 270 SUPERFAMILY RING/U-box 23 60 - -
Gso5g0787 270 ProSiteProfiles U-box domain profile. 1 58 IPR003613 GO:0004842|GO:0016567
Gso5g0787 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 58 IPR013083 -
Gso5g0787 270 SUPERFAMILY ARM repeat 81 259 IPR016024 -
Gso5g0787 270 PANTHER U BOX DOMAIN-CONTAINING 102 262 - -
Gso5g0787 270 PANTHER U BOX DOMAIN-CONTAINING 24 104 - -
Gso5g0787 270 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 102 262 - -
Gso5g0787 270 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 24 104 - -
Gso5g0787 270 Gene3D - 70 264 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0787 Gso-Chr5 18351337 18369404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0787 96 264 U-box Gene Family AT3G54850 65.089 1.09e-65 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0787 - - gmx:100807047 531.946