LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso5g0768	ATGGATCGGGCGGCGTTGACGGTCGGACCGGGCATGGACATGCCGATAATGCACGACAGCGACCGTTACGATCTGGTCCGCGACATCGGGTCCGGAAATTTCGGCGTGGCGAGGCTGATGCAGGATAAACAAACCAAGGAACTCGTCGCCGTCAAGTACATCGAAAGGGGTGATAAGATTGATGAAAATGTGAAGAGGGAAATTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGGGGAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATGAGGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCTATGCAAGTATGTCATCGGGACTTGAAGCTGGAAAACACTTTGCTGGATGGAAGCTCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTATTGTTGAAACAAGAGTATGATGGCAAGCTTGCAGATGTCTGGTCATGTGGAGTAACGTTATATGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTAATGAACCAAAGGACTTTCGCAAGACAATTCAGAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTGGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCAGCAGAGAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCTGCGGACCTGATGGACGAGAAGATAATGAGCAATCAATTTGAAGAGCCAGACCAACCCATGCAGAGCATCGATACGATCATGCAGATAATTTCAGAAGCTACCGTGCCAGCGGCTGGGACCTATTCTTTTGACAAGTTTATGGAGGAGCAAATTTATGACTTAGAATCTGAATCTGATGCTGAATCTGATCTTGATATTGATAGCAGTGGGGAAATAGTGTATGCCATATAG	1083	0.4497	MDRAALTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFEKICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKLADVWSCGVTLYVMLVGAYPFEDPNEPKDFRKTIQRVLSVQYSIPDGVQISPECGHLISRIFVFDPAERITMSEIWNHEWFLKNLPADLMDEKIMSNQFEEPDQPMQSIDTIMQIISEATVPAAGTYSFDKFMEEQIYDLESESDAESDLDIDSSGEIVYAI*	361

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso5g0768	360	PANTHER	SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE	14	354	-	-
Gso5g0768	360	Pfam	Protein kinase domain	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso5g0768	360	Gene3D	Phosphorylase Kinase; domain 1	1	98	-	-
Gso5g0768	360	ProSiteProfiles	Protein kinase domain profile.	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso5g0768	360	SMART	serkin_6	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso5g0768	360	Gene3D	Transferase(Phosphotransferase) domain 1	99	286	-	-
Gso5g0768	360	SUPERFAMILY	Protein kinase-like (PK-like)	16	317	IPR011009	-
Gso5g0768	360	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
Gso5g0768	360	PANTHER	SERINE/THREONINE KINASE	14	354	-	-
Gso5g0768	360	ProSitePatterns	Protein kinases ATP-binding region signature.	29	52	IPR017441	GO:0005524

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso5g0768	Gso-Chr5	16928002	16933205	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso5g0768	22	289	CBL-interacting serine-threonine protein kinases	AT4G24400	43.682	5.26e-67	215

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Gso5g0768		Pkinase	5.6e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso5g0768	K14498		-	gmx:100801175	727.628

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