LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso5g0762	ATGAGGTGGTTGCCCACGCTTTCGTTCTCCCCTTCGAATTCTTCTTCATCTTCTTCGTCGTCTTCTTCTGCCTCCGCTGCTTCCGCCGTGGATCACCGCCGGAAGGCGTGGCTCTTCGGAAATTCGTCGAAGAAGCGCGCCTGCCACGTCGGCGACCACGACGAAGATGCACTAGTTTCTTCCCCCGGCACGCCTCAGCAGTTGCCTCTGCCGGAGCTCTCCGCCGCCGCCGTGCTCCGTCAACAAGACGGTGAGTGCCGCCTTCCCTCGCCCAAGGACGCTGCACCCACCACCACCGGCTTTCGGATGAGGAGTGTTTTTGCTAGCCAAGAGACAAGAAGAAATATGGAGCAGGCTGAAACTAGGTCACCGAGAATGGTGCAGCAAGATGCAAGTGGTTGCAGTGAGAGTGCTCGAGATAATAGTAATAATAACTTGGTGAATGTCCCTCGTAGGAGGAGTATTTCAGGTAGTTCTTCTGCAAGTCCTTCAATGAGTCCTCAGAAAACAAGGAATGGTGATTTTGTGCCATATTATTACACGTATTCCAAAGGAAATCAGTTCTGGTCCGCACCAGAAATGCCTTCTTGTGAAGCAGGGTTGCTACCTCCTGCCTTCTTTGATTTATCCGCGTTAAGCACAGAAGCTTCCCTTTCTCCCAACTCCCATCAAAGTCTACAGATGAAAAGTTCCCAGAAACACACCAGAACTTTTAGTGGACCTCCATCCCCCATACATTCCATGTTACCACTTGAGATCTCAACAGCACGCCATGAAAGTAATGCTCCTCCTGTCGGTGTTCACCCATTGCCCCTGCCTCCTGGAGCTGCCTTGACCTCACCGCCTGCTGCTGCTACCTTTTCCCATGCCGTGGCTAAGTCAGAATCGTTCCCAATGAAAAGCCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACGTTTGGAAGCGTTTATGTCGCAACCAATAGGGAAACCGGAGCATTATGTGCAATGAAGGAAGTAGAGTTATTTCCTGATGATCCAAAATCTGCAGAGTGTATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCAATCTAAAACATTCAAACATCGTACAGTATTATGGCAGTGAAATAGTTGAGGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGTGCCATAACAGAATCTGTTATTCGGAATTTCACTCGGCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACCATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGACTCTGCTGGAGTTGTTAAGCTAGCTGATTTTGGGATGGCTAAGCATCTTACTGGGTTTGAAGCTAATCTTTCTTTGAGGGGAAGTCCATACTGGATGGCTCCAGAGCTTTTGCAGGCTGTGATACAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACCATCATTGAAATGTTCACTGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCTGCAGCTCTGTTTAAGGTTATGAAGGAGACCCCTCCTATACCTGAAACACTGTCATCTGAGGGTAAAGATTTTTTGAGGTGCTGCTTTAAGAGAAATCCAGCAGAGCGGCCAACAGCTGCGGTTTTACTAGAACATCGATTTTTGAAAAACTCGCAACTGCTGGATGTTTTATCTTCCACCCAGCTGTATAATGAAACAAGCTTCATGGACAAACCACATACTCCAAGTAGGCAATCTGAAAATAGTTATGATCAGTTGTCAACCCCCTGTGCAAAGATTGCAAAGGGTAAAGCTGCTGAGAGGCGAGGATTTCTCATTTCTTCGTTTGATATTCTCCCTGCATACTTGGACCAATAA	1905	0.464	MRWLPTLSFSPSNSSSSSSSSSSASAASAVDHRRKAWLFGNSSKKRACHVGDHDEDALVSSPGTPQQLPLPELSAAAVLRQQDGECRLPSPKDAAPTTTGFRMRSVFASQETRRNMEQAETRSPRMVQQDASGCSESARDNSNNNLVNVPRRRSISGSSSASPSMSPQKTRNGDFVPYYYTYSKGNQFWSAPEMPSCEAGLLPPAFFDLSALSTEASLSPNSHQSLQMKSSQKHTRTFSGPPSPIHSMLPLEISTARHESNAPPVGVHPLPLPPGAALTSPPAAATFSHAVAKSESFPMKSQWKKGKLIGRGTFGSVYVATNRETGALCAMKEVELFPDDPKSAECIKQLEQEIKVLSNLKHSNIVQYYGSEIVEDRFYIYLEYVHPGSINKYVREHCGAITESVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGFEANLSLRGSPYWMAPELLQAVIQKDNSPDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAALFKVMKETPPIPETLSSEGKDFLRCCFKRNPAERPTAAVLLEHRFLKNSQLLDVLSSTQLYNETSFMDKPHTPSRQSENSYDQLSTPCAKIAKGKAAERRGFLISSFDILPAYLDQ*	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso5g0762	634	MobiDBLite	consensus disorder prediction	1	27	-	-
	Gso5g0762	634	PRINTS	Tyrosine kinase catalytic domain signature	382	395	IPR001245	GO:0004672\|GO:0006468
	Gso5g0762	634	PRINTS	Tyrosine kinase catalytic domain signature	419	437	IPR001245	GO:0004672\|GO:0006468
	Gso5g0762	634	PRINTS	Tyrosine kinase catalytic domain signature	491	513	IPR001245	GO:0004672\|GO:0006468
	Gso5g0762	634	PRINTS	Tyrosine kinase catalytic domain signature	533	555	IPR001245	GO:0004672\|GO:0006468
	Gso5g0762	634	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	1	611	-	-
	Gso5g0762	634	ProSiteProfiles	Protein kinase domain profile.	303	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso5g0762	634	Pfam	Protein kinase domain	304	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso5g0762	634	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5	1	611	-	-
	Gso5g0762	634	SUPERFAMILY	Protein kinase-like (PK-like)	293	600	IPR011009	-
	Gso5g0762	634	MobiDBLite	consensus disorder prediction	121	170	-	-
	Gso5g0762	634	SMART	serkin_6	303	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso5g0762	634	Gene3D	Transferase(Phosphotransferase) domain 1	299	602	-	-
	Gso5g0762	634	MobiDBLite	consensus disorder prediction	84	170	-	-
	Gso5g0762	634	ProSitePatterns	Protein kinases ATP-binding region signature.	309	332	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso5g0762	Gso-Chr5	16178812	16184470	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso5g0762	141	567	MAP Kinase Kinase Kinase	AT5G66850	66.443	0.0	593

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Gso5g0762		Pkinase	4.7e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso5g0762	-		-	gmx:100796935	1189.48