Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0723 ATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAGAAAATTATTAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATAAACTGCAACAGCCTGGGACCACAATATGTATGTACGAGTTTTTGGACTTTCATTTGTATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAGAGACAGCGGTTGCCAGATAACAGCAATGTTGAAAAAATAAGGGAATTTATAAGGAATGTGTATGTGGATGGAAGATATGCTGGAGCGAAGTCTTCAGAAAAGCCTCCAAGAGATGCACAGAGCCCTGGAATTCATGAAGATGAGATTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCGTATGATTATCAATATGAGGATAGGCGGTATGGAAAACAAGCAGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGCTCGCTATGAAGGGAAGATGTCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATCACGCGTATGATGACAGATTTGCGAATGAGGGATCTGGTCCAAGAATTTCTGACTTTTCTGTGTCTAGTGGTGGTGAACAATTCAAATCCGATGTTCAGTCTCCCAATTTTCATAAGGATATCAAGATTAGAAGTCCATCCTATCAGCAGCGTTCTGGTTCTGGTTCTAGTTCAAGTGAAGATGTGTGGTATCAAGCAAGAAATGCATCTTTGGAAACTAATGCCAATGCCAAGAGAGATGCAGATGGAATTCGTCCTCCACAGAGAACTGTGTCAGCACAATCAAGAGACAACAAATTTCCATCCTTGAGATCTTATAATTCTGGCAGTTTAGTTGATTTTTTCTCAGAACCAGTCCAAGCTTCAGAACCACTTCAGAATAAAGCATTTGGCATTCCCAGACCACCTGGTCCTACAAGATCTGTTAGCATGGACCTCTCCAAGGCACCACTGGAATCAGCTTCATCTGTTGATCTTTTTCAGTTACCAGCAGCACCATCTCAAGCTCCAACATTGGATTTGTTTCAATCATCTCTTTCATCGGCAGATCCATCTTTCAACGAGAATCAACTTAGTCAAACATCCCATCTTGCATCTATTGATTTTTTTTCCGATTTTTCTCCGCAGCCTTCTACTGTAACCTCAGATGGGAAGGCACTGGAATTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATATGCCTCAGAGAACCTCCTCTACTGCACAAGTGGAAATTCCAACCACTGTACCCTCAAATGCTAAATCTTTAGAAGAAAAATTTGATCCATTTTCTACCTCAAATGCAAACATGCAATGGCCATCTTTTGATATGCCTCAAAGCACCTCCTCTACTGCACAAGTGGAAATTCCAGCCACTGCACCCTCAAGTGCTAAATCTTTACACGAAACATTTGATCCATTTTCAAGCTCAAATGCAAACAGGCAATGGCCATCTTTTGAAATTTCTAGTGTCAGTGTACCTTCTTCAGTTACATCTAATTTATGGCATGATGGTGTGTGGAATGGAGAAGAACAAGTTTCTGCTATGGCAGCAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTGGCCATCATCCTGTGGATTCCCTTAGTCAAGGATTACAATTGCACAATTTTCCATCAGCTGATAATCATATTTTGGGTTTAAGAGAGTCTGAGGGATCCAATGAAGATGGAGTTAAAGGCTTTGCCCCTGTTGGTGGATTTGATAATCATGACATCCCATCTCATGTCAGTTGCTCAGCATATCCCCCACCCATGCTTCCTCCAATGGGAGATATTCAACCTAATCAAATGAAATCTAAATCAACTAATCCATTTGATTATCCCTATGAATCTGATGTAGATCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGCTGCACTGCCAGATGCCCTGTTTCCAGCCACCTTCCATGGTGGGATAGCTGAATCTTGGCTTCCTCAAAACACGGTGACCCCATATATATCATCTGCTGGAGAAGGTGGTTTGTCATTCATGGCTATGCAATCACCAAGTACGCAAATACAGAACATCCAGAAACCGGAAACAGTTGATTCGATCCGGGGAAATCCTTTTGCATAG 2226 0.4187 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLKNWDFQRQRLPDNSNVEKIREFIRNVYVDGRYAGAKSSEKPPRDAQSPGIHEDEIRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKARYEGKMSSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVSSGGEQFKSDVQSPNFHKDIKIRSPSYQQRSGSGSSSSEDVWYQARNASLETNANAKRDADGIRPPQRTVSAQSRDNKFPSLRSYNSGSLVDFFSEPVQASEPLQNKAFGIPRPPGPTRSVSMDLSKAPLESASSVDLFQLPAAPSQAPTLDLFQSSLSSADPSFNENQLSQTSHLASIDFFSDFSPQPSTVTSDGKALELSVPKNEGWATFDMPQRTSSTAQVEIPTTVPSNAKSLEEKFDPFSTSNANMQWPSFDMPQSTSSTAQVEIPATAPSSAKSLHETFDPFSSSNANRQWPSFEISSVSVPSSVTSNLWHDGVWNGEEQVSAMAANTQPWNAFEDSGGHHPVDSLSQGLQLHNFPSADNHILGLRESEGSNEDGVKGFAPVGGFDNHDIPSHVSCSAYPPPMLPPMGDIQPNQMKSKSTNPFDYPYESDVDHNNMFLDMSSLQAALPDALFPATFHGGIAESWLPQNTVTPYISSAGEGGLSFMAMQSPSTQIQNIQKPETVDSIRGNPFA* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0723 741 MobiDBLite consensus disorder prediction 290 304 - -
Gso5g0723 741 MobiDBLite consensus disorder prediction 481 516 - -
Gso5g0723 741 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Gso5g0723 741 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Gso5g0723 741 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Gso5g0723 741 PANTHER ARFGAP/RECO-RELATED 1 741 IPR044820 GO:0005096
Gso5g0723 741 MobiDBLite consensus disorder prediction 248 263 - -
Gso5g0723 741 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Gso5g0723 741 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Gso5g0723 741 MobiDBLite consensus disorder prediction 275 304 - -
Gso5g0723 741 MobiDBLite consensus disorder prediction 722 741 - -
Gso5g0723 741 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Gso5g0723 741 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Gso5g0723 741 MobiDBLite consensus disorder prediction 217 234 - -
Gso5g0723 741 CDD ArfGap_AGFG 11 121 - -
Gso5g0723 741 MobiDBLite consensus disorder prediction 211 263 - -
Gso5g0723 741 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Gso5g0723 741 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0723 Gso-Chr5 13017084 13025147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0723 14 137 C2H2 Transcription Factor Family AT3G07940 32.836 2.56e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0723 K15044 - gmx:100788316 1458.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0723 5 13017084 13025147 Gso19g0609 19 21702037 21710169 GST