Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0669 ATGGGTGAGGAATCCAGTTTGCTTAAAGAAAGCACATCAATCAATGACACCAATATGGTGGAAGAGGTTGAAGAAAGGGATCCAGAAAGCAATCCATTGAATGAGCCACTTCTCAAGAGGAACAGGACTTTGTCTTCCAATCCACTTGCTCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGACTACGAGATCAATGAGAATGACCTGTTCAAACAAGATTGGAGGAGCAGATCAAGAACTCAAGTGTTGCAATACATATTCTGGAAATGGACTCTGGCATTCCTTGTTGGACTTCTCACTGGTGTCATAGCCACTCTTATCAATCTTGCTGTTGAGAACATTGCCGGGTACAAGTTTCTTGCTGTTGTCAACTTTATCCAAAAAGAAAGGTACTTGAGAGGTTTCCTATATTTCACGGGCATTAATTTCCTTTTGACATTTGTTGCTTCTATTCTGTGTGTGTGTTTTGCACCCACGGCAGCTGGGCCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTATGGTGCCACCACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTATCTGCAGGCCTAGATTTAGGAAAAGAAGGGCCATTGGTACACATTGGAAGCTGCATTGCTTCCTTACTAGGCCAAGGAGGCCCTGACAATTACAGGATCAAGTGGCGCTGGCTACGGTATTTCAACAACGATCGTGACCGTCGCGATCTTATTACTTGTGGTGCTTCTTCAGGGGTTTGTGCAGCTTTCAGGGCACCTGTGGGAGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTCCTCTGGAGAACATTTTTCAGCACAGCTGTGGTGGTGGTAGTGCTAAGGGCCTCTATTGAACTTTGCCACAAAGGCAAGTGTGGTCTTTTTGGTGAAGGAGGGCTCATCATGTATGATGTGAGCGATGTCACTGTTAGGTACAATGTGATGGATATCATCCCTGTTGTTATCATTGGAGTCCTAGGTGGGGTATTGGGAAGCCTTTACAACTATCTTCTCCATAAGGTCCTCCGTGTCTACAATCTCATCAATCAGAAAGGAAAAATGTACAAGCTCCTCCTCAGTCTTTCAGTTGCAATCTTCACATCAGCGTGCCAATATGGTCTCCCATTCCTAGCAAAATGTACCCCTTGTGATCCATCCCTCTCAGATGTGTGCCCCACCAACGGGCGTTCTGGAAACTTCAAACAATTCAACTGCCCAAAAGGCTACTACAATGATCTTGCTACTCTTCTTCTGACCACCAATGATGATGCTGTTAGAAACATATTCTCAACCAACACCCCTCTTGAATACCAACCCTCCTCCATCATAATTTTCTTTGCACTGTATTGCATACTAGGACTAATCACCTTTGGGATTGCTGTGCCATCAGGGCTCTTCCTCCCCATCATTCTCATGGGTTCCGGCTACGGTCGCCTTCTCGGCATCCTCATGGGGCCTCACACAAACATTGATCAAGGGCTGTTTGCAGTCCTTGGTGCAGCCTCACTCATGGCTGGATCCATGAGAATGACTGTGTCCCTTTGTGTGATCTTCCTTGAACTAACCAACAACCTTCTCCTACTACCAATAACCATGATTGTTCTCCTCATAGCTAAAACTGTTGGAGACAGCTTCAACCCAAGCATCTATGAGATCATATTGCACCTGAAAGGCCTCCCTTTCATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTGGGTGAGCTTGTTGATGTGAAGCCAGCAGTGGTTAGCTTCAAAGGAGTAGAAAAGGTGGCTAACATAGTCAATGCCTTGAAAAACACTACACATAATGGTTTTCCTGTGATGGATTGTGGGCTGGTGCCAACCACAGGAGTGGCCAATGAGGCTACAGAACTGCACGGAATCATTCTAAGAGCACACCTTATCCAAGTGCTGAAGAAGAAGTGGTTCTTGAAGGAGAGAAGGAGAACTGAGGAATGGGAAGTTAGAGAGAAATTTACATGGGTGGAGCTGGCTGAGAGAGAAGGGAATATTGAAGATGTGGCTGTGACAAAAGAAGAAATGGAGATGTTTGTTGATTTGCATCCTCTCACCAATACTACACCCTTCACAGTGCTAGAGAGTATGTCAGTTGCAAAAGCAATGGTTCTCTTCAGACAAGTAGGACTTCGCCATATGCTTGTTGTGCCAAAGTATCAAGCTTCAGGGGTATCTCCTGTGATTGGGATCCTGACCCGGCAAGATCTACTGGCATACAACATTCTGACAGTGTTTCCTCACCTGGCAAAATCAAAGAGGAAGTGA 2352 0.4524 MGEESSLLKESTSINDTNMVEEVEERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRTQVLQYIFWKWTLAFLVGLLTGVIATLINLAVENIAGYKFLAVVNFIQKERYLRGFLYFTGINFLLTFVASILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRASIELCHKGKCGLFGEGGLIMYDVSDVTVRYNVMDIIPVVIIGVLGGVLGSLYNYLLHKVLRVYNLINQKGKMYKLLLSLSVAIFTSACQYGLPFLAKCTPCDPSLSDVCPTNGRSGNFKQFNCPKGYYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSIIIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGILMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSFKGVEKVANIVNALKNTTHNGFPVMDCGLVPTTGVANEATELHGIILRAHLIQVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNTTPFTVLESMSVAKAMVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPHLAKSKRK* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0669 783 CDD CBS_pair_voltage-gated_CLC_euk_bac 601 768 - -
Gso5g0669 783 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso5g0669 783 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso5g0669 783 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso5g0669 783 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso5g0669 783 PRINTS Plant CLC chloride channel signature 432 448 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso5g0669 783 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 782 - -
Gso5g0669 783 MobiDBLite consensus disorder prediction 1 37 - -
Gso5g0669 783 SMART cbs_1 717 770 IPR000644 -
Gso5g0669 783 SMART cbs_1 603 662 IPR000644 -
Gso5g0669 783 Pfam CBS domain 716 768 IPR000644 -
Gso5g0669 783 MobiDBLite consensus disorder prediction 1 18 - -
Gso5g0669 783 Gene3D Clc chloride channel 83 583 - -
Gso5g0669 783 Gene3D - 584 773 IPR046342 -
Gso5g0669 783 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso5g0669 783 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso5g0669 783 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso5g0669 783 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso5g0669 783 PRINTS Chloride channel signature 512 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso5g0669 783 PRINTS Chloride channel signature 530 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso5g0669 783 PRINTS Chloride channel signature 568 582 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso5g0669 783 Pfam Voltage gated chloride channel 148 561 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso5g0669 783 PANTHER CHLORIDE CHANNEL PROTEIN 1 782 - -
Gso5g0669 783 MobiDBLite consensus disorder prediction 19 33 - -
Gso5g0669 783 SUPERFAMILY CBS-domain pair 585 768 IPR046342 -
Gso5g0669 783 ProSiteProfiles CBS domain profile. 714 780 IPR000644 -
Gso5g0669 783 CDD ClC_6_like 60 581 - -
Gso5g0669 783 SUPERFAMILY Clc chloride channel 69 583 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0669 Gso-Chr5 10002421 10007490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0669 24 781 Ion Channels AT3G27170 79.815 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0669 K05016 - gmx:778094 1511.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0783 19 31906644 31911602 Gso5g0669 5 10002421 10007490 PCT
Gso16g0475 16 5606464 5612042 Gso5g0669 5 10002421 10007490 PCT
Gso5g0669 5 10002421 10007490 Gso19g0783 19 31906644 31911602 PCT
Gso5g0669 5 10002421 10007490 Gso16g0475 16 5606464 5612042 PCT