Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0657 ATGAAGACTTTCTCCTCAATTCAGCCACCCCACCATTTTCGTTGCACAAGATTTTTCTCAAACACTACCACAAGGGCTCAACTTCCCTTTCCTGCAAAGGTCTTCTTTTGCCAGGCAAAATCTGGCATAGATGGATCGTTGAATTTAAAAGTGGTGTCTCCCACTCTATTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAATTGCTGCTAGAACCAGCAAGAAGTCAGATCATTTTATTGATCACCTTGTCTCAAGGCTTCACTCTAAACACAAATCTTGGTATCTCGCAGGGAGAGAGCTTACAACTCTAGAGATCAGGGATGCACTTATCCCTTATCTTGAATCTCTTTTTGAAGAGCATGGAGACATCCTAGTGGATGTAGTGGAAAACTATCCAAATCCTCCTGGTAAGGATAAATCGGCTGTGCTGGTTCCTCCTTCTAATCCAGTGTTAGACTCTAAGAAGCTTAAAGCTGTGTCTCGAGTGAGTGAGACAGACCCCGATGGTGGAAATCTTCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTAGGAGTATCACACGACGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAAAGAGAACATTCCCACTATCCTCACTAAAAGACCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTTTTCGAATCTTTGGGTGTTGACAAAAACCAATGGCCAAAGGTGATCTATCGCTTCCCAGCACTGCTAACTTATAGCAGGCCAAAAGTGATGGAAAGCATAGATTTTCTCCTTGAATTAGGCCTCTCAGAAGAGGGTATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTACTTCCGTTCTTTGGGGGTTGATGTTGGCATTCTTCTCTTCAGATGCCCACAGAATTTTGGTCTTAGCATTGAGACCAACCTAAAGCCTGTAACAGAATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACATTCAGCTTGACTGAAAATTTGATACCAAAATGGGATTTCTTCTTGACCACAGGTTACCCAAAATCTGAGTTGGTTAAGTTCCCACAATATTTTGGGTACAATTTAGAGGAAAGGATTAAACCTAGATTTGAAATTATGACAAAATCTGGAGTGAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGCAGCAACTTTGATGAAGCCTTGAAAAAGAAAATGAAGAAAATGCAAGTGAGTTAG 1416 0.411 MKTFSSIQPPHHFRCTRFFSNTTTRAQLPFPAKVFFCQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGLSNAIAARTSKKSDHFIDHLVSRLHSKHKSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPNPPGKDKSAVLVPPSNPVLDSKKLKAVSRVSETDPDGGNLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPTILTKRPQLCGISLSENLKPTMKFFESLGVDKNQWPKVIYRFPALLTYSRPKVMESIDFLLELGLSEEGIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIETNLKPVTEFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYNLEERIKPRFEIMTKSGVKLLLNQVLSLSSSNFDEALKKKMKKMQVS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0657 471 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 23 469 - -
Gso5g0657 471 Pfam mTERF 190 371 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 Pfam mTERF 348 457 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Gso5g0657 471 Gene3D Transcription termination factor 3, mitochondrial 248 467 IPR038538 -
Gso5g0657 471 PANTHER CGI-12 PROTEIN-RELATED 23 469 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0657 Gso-Chr5 9445708 9449214 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gso5g0657 mTERF 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0657 K15032 K12177 gmx:100781900 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0657 5 9445708 9449214 Gso19g0658 19 27186600 27189850 GST