Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0654 ATGGAGCAGAGAAAAAGCATATGGTCTCCCGTCACAGATCCAAGAAGTGGTTTCAACCGGGAATCCAGAACTTTCCACAGCCTCAAGCCCCCTCTCCGTCTCCCTCCCCCCAACGCCGCCGTCTCCGCAGCCGCCTTCGCCCTCTTCCTCCGCCGCAACTCGCAGTTCCCGGACTCCTCCACCGCCTTTATCGACTCTGCCACCGGCCACCGCCTCTCCTACGGCGAGCTCCTCCACCGCGCCAAAACCCTAGCCTCGAATCTCGCCACAATCCTCAAACTCACCAAAGGCGACACAGCGCTCGTTCTCTCACCAAATATTCTCCAAGTTCCGATCCTCTGCTTCGCGCTTCTTTCTCTCGGCGTGGTCGTCTCCCCCGCGAACCCTCTCTCCACGCGCTCCGAGCTCACGCGCTTCTTCAACATCAGCAACCCCTCAATTGTCTTCACAGTAACCTCCGTCGTTGAAAAAACACGCGAGTTTCAAGTGAAAACCGTGCTCCTGGACTCTCCCGAGTTCGACACGCTCACGAAGTCTCAGATTCACACAAAATACATCCAAGAGTGTGATTCTCATCAGAGGGGACTCGTGTCAAACATGCAAGTGACTCAGTCCGACGTGGCAGCGATTCTATACTCCTCGGGAACCACGGGAACGATAAAGGGTGTGATGCTCACGCACCGTAACTTAACCGCGATCGCCGCGGGATACGATACCGTTCGGGAGAAGCGGAAGGAGCCAGCGGTGGTGCTCTATACGGTGCCGTTTTTCCACGTGTACGGGTTCACGTTCAGCTTGGGGGCGATGGTGCTGTCGGAGACGGTGGTGATCATGGAGAGGTTCAGCATGAAGGCGATGCTGAGCGCCGTGGAGAGGTTCCGGGTGACGCACGCTACGATGGTGCCGGCGCTGGTGGTGGCTATGACGAAAGACTGCGTCATCGCCGGCTACGATTTGACGTCGCTGGAAGGGATCGTTTGCGGCGGATCTCCGCTGAGGAAAGAAACCGATGAGGCATTCAAAGCTAAGTTCCCCAACGTCCTCGTCATGCAGGGATACGGTTTAACTGAGTCTGCAGTTACCCGAACCACTCCAGAGGAGGCAAATCAGGTGGGAGCAACAGGTAAACTGATACCAAATATAGAAGCCAAAATTGTGAACCCAGAAACAGGGGAAGCCATGTTTCCCGGTGAACAAGGAGAACTCTGGATCAGAGGACCTTATGTTATGAAAGGTTATTCTGGTGACCCAAAAGCAACTTCAGCAACTTTGGTGGATGGGTGGTTAAGGACTGGGGACCTCTGTTATTTTGATAGCAAAGGTTTCTTGTATGTTGTAGATAGGTTGAAAGAGTTGATTAAATACAAGGGCTACCAGGTTGCTCCGGCAGAGCTAGAAGAGTTACTCCTATCTCATTCAGAGATAAATGATGCTGCAGTTATTCCATACCCTGATGAAGTAGCAGGCCAAGTGCCCATGGCGTTTGTGGTGAGACAACCTCAAAGTTCCCTTGGCGCAGCAGAAGTTATTGATTTTGTTGCCAAACAGGTTTCACCGTACAAGAAAATAAGGCGTGTAGCATTTGTTAATTCCATACCCAAGAATGCTGCGGGAAAGATACTGAGGAAGGACTTAAAACTGGCGCTCTCTAGGTTGTAA 1659 0.5274 MEQRKSIWSPVTDPRSGFNRESRTFHSLKPPLRLPPPNAAVSAAAFALFLRRNSQFPDSSTAFIDSATGHRLSYGELLHRAKTLASNLATILKLTKGDTALVLSPNILQVPILCFALLSLGVVVSPANPLSTRSELTRFFNISNPSIVFTVTSVVEKTREFQVKTVLLDSPEFDTLTKSQIHTKYIQECDSHQRGLVSNMQVTQSDVAAILYSSGTTGTIKGVMLTHRNLTAIAAGYDTVREKRKEPAVVLYTVPFFHVYGFTFSLGAMVLSETVVIMERFSMKAMLSAVERFRVTHATMVPALVVAMTKDCVIAGYDLTSLEGIVCGGSPLRKETDEAFKAKFPNVLVMQGYGLTESAVTRTTPEEANQVGATGKLIPNIEAKIVNPETGEAMFPGEQGELWIRGPYVMKGYSGDPKATSATLVDGWLRTGDLCYFDSKGFLYVVDRLKELIKYKGYQVAPAELEELLLSHSEINDAAVIPYPDEVAGQVPMAFVVRQPQSSLGAAEVIDFVAKQVSPYKKIRRVAFVNSIPKNAAGKILRKDLKLALSRL* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0654 552 CDD 4CL 53 545 - -
Gso5g0654 552 Pfam AMP-binding enzyme C-terminal domain 464 539 IPR025110 -
Gso5g0654 552 Gene3D - 451 550 IPR045851 -
Gso5g0654 552 Pfam AMP-binding enzyme 51 455 IPR000873 -
Gso5g0654 552 ProSitePatterns Putative AMP-binding domain signature. 210 221 IPR020845 -
Gso5g0654 552 MobiDBLite consensus disorder prediction 1 20 - -
Gso5g0654 552 SUPERFAMILY Acetyl-CoA synthetase-like 46 546 - -
Gso5g0654 552 Gene3D - 34 450 IPR042099 -
Gso5g0654 552 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 13 549 - -
Gso5g0654 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0654 Gso-Chr5 9253333 9271347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0654 9 545 Monolignol Biosynthesis Gene Families AT5G63380 48.644 7.67e-180 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0654 - - gmx:100784234 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0654 5 9253333 9271347 Gso19g0663 19 27329515 27339299 GST