LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso5g0654	ATGGAGCAGAGAAAAAGCATATGGTCTCCCGTCACAGATCCAAGAAGTGGTTTCAACCGGGAATCCAGAACTTTCCACAGCCTCAAGCCCCCTCTCCGTCTCCCTCCCCCCAACGCCGCCGTCTCCGCAGCCGCCTTCGCCCTCTTCCTCCGCCGCAACTCGCAGTTCCCGGACTCCTCCACCGCCTTTATCGACTCTGCCACCGGCCACCGCCTCTCCTACGGCGAGCTCCTCCACCGCGCCAAAACCCTAGCCTCGAATCTCGCCACAATCCTCAAACTCACCAAAGGCGACACAGCGCTCGTTCTCTCACCAAATATTCTCCAAGTTCCGATCCTCTGCTTCGCGCTTCTTTCTCTCGGCGTGGTCGTCTCCCCCGCGAACCCTCTCTCCACGCGCTCCGAGCTCACGCGCTTCTTCAACATCAGCAACCCCTCAATTGTCTTCACAGTAACCTCCGTCGTTGAAAAAACACGCGAGTTTCAAGTGAAAACCGTGCTCCTGGACTCTCCCGAGTTCGACACGCTCACGAAGTCTCAGATTCACACAAAATACATCCAAGAGTGTGATTCTCATCAGAGGGGACTCGTGTCAAACATGCAAGTGACTCAGTCCGACGTGGCAGCGATTCTATACTCCTCGGGAACCACGGGAACGATAAAGGGTGTGATGCTCACGCACCGTAACTTAACCGCGATCGCCGCGGGATACGATACCGTTCGGGAGAAGCGGAAGGAGCCAGCGGTGGTGCTCTATACGGTGCCGTTTTTCCACGTGTACGGGTTCACGTTCAGCTTGGGGGCGATGGTGCTGTCGGAGACGGTGGTGATCATGGAGAGGTTCAGCATGAAGGCGATGCTGAGCGCCGTGGAGAGGTTCCGGGTGACGCACGCTACGATGGTGCCGGCGCTGGTGGTGGCTATGACGAAAGACTGCGTCATCGCCGGCTACGATTTGACGTCGCTGGAAGGGATCGTTTGCGGCGGATCTCCGCTGAGGAAAGAAACCGATGAGGCATTCAAAGCTAAGTTCCCCAACGTCCTCGTCATGCAGGGATACGGTTTAACTGAGTCTGCAGTTACCCGAACCACTCCAGAGGAGGCAAATCAGGTGGGAGCAACAGGTAAACTGATACCAAATATAGAAGCCAAAATTGTGAACCCAGAAACAGGGGAAGCCATGTTTCCCGGTGAACAAGGAGAACTCTGGATCAGAGGACCTTATGTTATGAAAGGTTATTCTGGTGACCCAAAAGCAACTTCAGCAACTTTGGTGGATGGGTGGTTAAGGACTGGGGACCTCTGTTATTTTGATAGCAAAGGTTTCTTGTATGTTGTAGATAGGTTGAAAGAGTTGATTAAATACAAGGGCTACCAGGTTGCTCCGGCAGAGCTAGAAGAGTTACTCCTATCTCATTCAGAGATAAATGATGCTGCAGTTATTCCATACCCTGATGAAGTAGCAGGCCAAGTGCCCATGGCGTTTGTGGTGAGACAACCTCAAAGTTCCCTTGGCGCAGCAGAAGTTATTGATTTTGTTGCCAAACAGGTTTCACCGTACAAGAAAATAAGGCGTGTAGCATTTGTTAATTCCATACCCAAGAATGCTGCGGGAAAGATACTGAGGAAGGACTTAAAACTGGCGCTCTCTAGGTTGTAA	1659	0.5274	MEQRKSIWSPVTDPRSGFNRESRTFHSLKPPLRLPPPNAAVSAAAFALFLRRNSQFPDSSTAFIDSATGHRLSYGELLHRAKTLASNLATILKLTKGDTALVLSPNILQVPILCFALLSLGVVVSPANPLSTRSELTRFFNISNPSIVFTVTSVVEKTREFQVKTVLLDSPEFDTLTKSQIHTKYIQECDSHQRGLVSNMQVTQSDVAAILYSSGTTGTIKGVMLTHRNLTAIAAGYDTVREKRKEPAVVLYTVPFFHVYGFTFSLGAMVLSETVVIMERFSMKAMLSAVERFRVTHATMVPALVVAMTKDCVIAGYDLTSLEGIVCGGSPLRKETDEAFKAKFPNVLVMQGYGLTESAVTRTTPEEANQVGATGKLIPNIEAKIVNPETGEAMFPGEQGELWIRGPYVMKGYSGDPKATSATLVDGWLRTGDLCYFDSKGFLYVVDRLKELIKYKGYQVAPAELEELLLSHSEINDAAVIPYPDEVAGQVPMAFVVRQPQSSLGAAEVIDFVAKQVSPYKKIRRVAFVNSIPKNAAGKILRKDLKLALSRL*	553

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso5g0654	552	CDD	4CL	53	545	-	-
Gso5g0654	552	Pfam	AMP-binding enzyme C-terminal domain	464	539	IPR025110	-
Gso5g0654	552	Gene3D	-	451	550	IPR045851	-
Gso5g0654	552	Pfam	AMP-binding enzyme	51	455	IPR000873	-
Gso5g0654	552	ProSitePatterns	Putative AMP-binding domain signature.	210	221	IPR020845	-
Gso5g0654	552	MobiDBLite	consensus disorder prediction	1	20	-	-
Gso5g0654	552	SUPERFAMILY	Acetyl-CoA synthetase-like	46	546	-	-
Gso5g0654	552	Gene3D	-	34	450	IPR042099	-
Gso5g0654	552	PANTHER	4-COUMARATE--COA LIGASE-LIKE 9	13	549	-	-
Gso5g0654	552	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	13	549	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso5g0654	Gso-Chr5	9253333	9271347	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso5g0654	9	545	Monolignol Biosynthesis Gene Families	AT5G63380	48.644	7.67e-180	516

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso5g0654	-		-	gmx:100784234	1050.43

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso5g0654	5	9253333	9271347	Gso19g0663	19	27329515	27339299	GST

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