Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0632 ATGAAATTTTTCAAGAAAGGTGAAGGTTACAAAATGGGAAGACAGCCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCGCAAGCTTGTGAATTTCATCATCAATAATGGTATCCACTGCTGGAGAACAGTTCCCAAGCTAGCAGGCTTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGATTCACTGAAATGGAAGAGGATCAAATTATGCAACTGCATTCGTGTCTTGGTAATAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAGGCTGAAGCTCCTTGGTTTGGACCCTTTGACACTGAAGCCAGCTGAGCAAAAGGAAAAGTCGGGTGATGACATAAAAAATATAGAATTACAACCAAACACTTCAAAAGGGTCTGAACAAGGTGTGGAGAACAAATCCTTGGACATGCATGGCACAAGAGAAGTGGCAAAAACAGAAGGGAAAATTGAAGAGAACGAGGTGACATGGGATGATACCACTGGAATTTTCAACAATTATGAAATGCTGTGCTCACAGTTGGACTTGGGATCATGGGTGAGCCAAGAAACCAAATCCAGCACTAGTTCTTATTGTAGTTCTTCTTTCTCACTTGATGATTCTAGCAACCATTCTGTGGGTGAATCCTCTTACCTTCAGGAAAATTCCTTACAGCAATGGGTTGATGATTTGGATTCCATTCTGTCTTGGGATAACTTCAATTCTCTTGAGAAAGATTTTCTCTTCTTGGATAATAGGCAATAA 855 0.4082 MKFFKKGEGYKMGRQPCCDKVGLKRGPWTIEEDRKLVNFIINNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIMQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPLTLKPAEQKEKSGDDIKNIELQPNTSKGSEQGVENKSLDMHGTREVAKTEGKIEENEVTWDDTTGIFNNYEMLCSQLDLGSWVSQETKSSTSSYCSSSFSLDDSSNHSVGESSYLQENSLQQWVDDLDSILSWDNFNSLEKDFLFLDNRQ* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0632 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Gso5g0632 284 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Gso5g0632 284 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Gso5g0632 284 MobiDBLite consensus disorder prediction 140 169 - -
Gso5g0632 284 SMART sant 77 125 IPR001005 -
Gso5g0632 284 SMART sant 24 74 IPR001005 -
Gso5g0632 284 CDD SANT 27 72 IPR001005 -
Gso5g0632 284 Gene3D - 22 78 - -
Gso5g0632 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Gso5g0632 284 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Gso5g0632 284 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Gso5g0632 284 MobiDBLite consensus disorder prediction 152 167 - -
Gso5g0632 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 262 - -
Gso5g0632 284 Gene3D - 80 155 - -
Gso5g0632 284 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Gso5g0632 284 CDD SANT 81 121 IPR001005 -
Gso5g0632 284 PANTHER MYB DOMAIN PROTEIN 40 13 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0632 Gso-Chr5 8062408 8064793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0632 12 207 MYB Transcription Factor Family AT5G16600 56.158 2.41e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0632 Myb_DNA-binding 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0632 K09422 - gmx:100777804 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0632 5 8062408 8064793 Gso19g0490 19 9530549 9532458 GST