Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0629 ATGCAGGATACTGAACCTGATATAAAAAGGCACCCCCTGGAAGATGCAGAAAATGAATGTCCAATATCCCCTGAGGTGGTGATTGATATGGGGCAGGAGAGTCAGACTCAAAACCACAGTGATTTCTCCGTCTCAGACACTAACAAGGTCATTGACACCGAGAATGAGTGTACCAGTCCAAATGTTTGTCCTGTTGACAATAGTCACATGGAAATTAATGATGAATGCCAGACATCAAATATTTTCCATGTTGACAAATTTCCTACTAACGTCAGTAGTGGACAGTTGTGTGAGACTGAGAACCCCTGTGCTACCTTTGTTACAATGACTAGTACTGATGTAAAAAATGAGGAGGAAATATGTGTGGCACCCAAGATTGGCATGGAGTTTGAATCAGAAGACACTGCTTACAAATGTTATAGCGAGTATGCTGTCCTCAACGGTTTCAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTGCAGTGGTGTCCAGAAGATACACCTGCCATAGACAGGGTTATCGTCCTAGCAAAAATGGTACATACTTGAGGAAATTGAAGCAGGAAACAAGAACTGGTTGTTTGGCACACATGACTATTTCTCGTCAGCCGAATGGAAAGTTTTGTGTCATTAATTTTGAAACTGAGCACAATCACGAGTTAGTAACACCCTGTACTGCTCATATGTTACAATCACAGAAAAGATTGACTTTTGCTCAAGCTGTTGAAGCAAACTTAACCAAGTCAGGGTTGGATGGGGTACCAAAACTGGGAATGGGATTTGACTCAGAGGAGCATGCATATGAATTTTATAATACATATGCTGGACATGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGTGCTGTGGCATCTAGACGATTTACTTGCTTCAGAGAAGGTTTTCGGCATAAAGACAAACAGGATACAAATGTAAAGAGACCTCGAAAGGATACTAGAATTGGATGTTTAGCACAACTGGTAATTTCTCGACAACCTGATGGTAGATATCATATTACTCACTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTGCATGTAGAGTGCACATGTTAAGATCACAAAAGAAGCTAGCTACAACTCAAGTTGAAAAGAACATTGCAGATGGATCTAATGTGCTGCCCACGTCAACCTCTGAATCCAATTGCAAGGCTATTGAAGGCTTTGTTGATATGGATTGTGATCCCATGGGTCATGAATACAAACTACCTTTCAAATGTACAAGCAAAATGAAAGAGGGAGAAATTGAAAAGATTAAACATCACTTCCAAATCAAGCAATCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCTGATGATCAAATAACTAATATATTTTGGGCTGATACAAAGATGATGGTAGACTACGGTGATTTTGGTGATGTTATTTGTTTTGATAGTAGTTATAAATATTATAAGGACTTCCGGCCATTTGTTCCGTTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGCAGCACTTCTTTATAATGAATCTGTAGAATCTTTGAAGTGGCTGTTTCGAGTTTTCATTGAGGCAATGTCTGGACGCAAGCCAAAGACAATCCTTACAGATCTAGACATAATAACAGCTGAAGCAATCAATTCCATATCACCTCAAACAAATCATCGAGTTTGTGTATGGCATGTCTATCAAGATGCCCTCAAACAGCTGAGTCATGTTTCTGTTAGATCTGGTTCTTTTGTAAATGATTTGAGAAGCTGCTTCTTTGATAATGAGGAGGAGGATTATTTTGTTAATGCATGGAATGCTCTCCTGGACAAGTATGATCTGTGGCAAAATGAATGGTTGCAACAAATATATGGCAGCAGAGATAGATGGGCCATAGCATATGGAAGACAGTTTTTTTGTGCTGACATGGTAAGCATGCTACTGAGAGAAAATCTTACTGGCAACCTGAAAAAGTACCTAAAGCATGGCACAGACATTCTTCCACTTTTGAAGTATCTTGTTAAGGTTGTTACTGATTGGCACTACAGGGAATTAGAAGCCAATTATGACATGAGCCAGCATATGCCACCGCTGATGGGGGATATCATTACGTTAAAGCATGCAAGTGCTCCATACACACCTAAGATATTTGAGTTATTTCAGAAAGAATATGAAGCATGTTTGAATCTAGTGATAAAGCATTGCACTGAGAGTGGATCATTGTATAATTATAAAGTTAGCATATATGAACAGGTACGAGAGTATTCGGTTACTTTTGATTCTTCTAACAAGACAATCAGTTGCTGCTGTATGAAATTTGAGTATGTGGGAATCTTATGCTGCCATGCATTAAAAGTTCTTGACTATAGGAACATAAGGATAGTTCCATCCCAGTACATCTTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2451 0.3856 MQDTEPDIKRHPLEDAENECPISPEVVIDMGQESQTQNHSDFSVSDTNKVIDTENECTSPNVCPVDNSHMEINDECQTSNIFHVDKFPTNVSSGQLCETENPCATFVTMTSTDVKNEEEICVAPKIGMEFESEDTAYKCYSEYAVLNGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPSKNGTYLRKLKQETRTGCLAHMTISRQPNGKFCVINFETEHNHELVTPCTAHMLQSQKRLTFAQAVEANLTKSGLDGVPKLGMGFDSEEHAYEFYNTYAGHVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRHKDKQDTNVKRPRKDTRIGCLAQLVISRQPDGRYHITHFEEKHNHELVAACRVHMLRSQKKLATTQVEKNIADGSNVLPTSTSESNCKAIEGFVDMDCDPMGHEYKLPFKCTSKMKEGEIEKIKHHFQIKQSKNPSFFYAFQLDADDQITNIFWADTKMMVDYGDFGDVICFDSSYKYYKDFRPFVPFLGINNHQQMTIFGAALLYNESVESLKWLFRVFIEAMSGRKPKTILTDLDIITAEAINSISPQTNHRVCVWHVYQDALKQLSHVSVRSGSFVNDLRSCFFDNEEEDYFVNAWNALLDKYDLWQNEWLQQIYGSRDRWAIAYGRQFFCADMVSMLLRENLTGNLKKYLKHGTDILPLLKYLVKVVTDWHYRELEANYDMSQHMPPLMGDIITLKHASAPYTPKIFELFQKEYEACLNLVIKHCTESGSLYNYKVSIYEQVREYSVTFDSSNKTISCCCMKFEYVGILCCHALKVLDYRNIRIVPSQYILKRWTKDARV* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0629 816 SMART 26again6 772 799 IPR006564 GO:0008270
Gso5g0629 816 MobiDBLite consensus disorder prediction 1 20 - -
Gso5g0629 816 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 251 816 IPR031052 GO:0006355
Gso5g0629 816 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 241 IPR031052 GO:0006355
Gso5g0629 816 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 77 241 - -
Gso5g0629 816 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 251 816 - -
Gso5g0629 816 ProSiteProfiles Zinc finger SWIM-type profile. 761 797 IPR007527 GO:0008270
Gso5g0629 816 MobiDBLite consensus disorder prediction 1 18 - -
Gso5g0629 816 Pfam FAR1 DNA-binding domain 272 360 IPR004330 -
Gso5g0629 816 Pfam FAR1 DNA-binding domain 140 225 IPR004330 -
Gso5g0629 816 Pfam MULE transposase domain 481 574 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0629 Gso-Chr5 7963804 7969723 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso5g0629 MULE 8.7e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0629 K17604 - gmx:102659753 1696.79