Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso5g0609 | ATGGTTTTCTCTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGGCTCAAGGTTCTTCTCCTTGAGAGAGACAACATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTACAATGTTTCTACATTCTGTGAGGAGAATGAAGCCTTGTCAGCAATCTCAAGTGGACTCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGTGGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCTTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGAAAACCACTATCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCCAGGGCAAGCATCCTGTCTGAATCACTTAAACCTGTCAAAGAATCTGTAGTGTCCATGTTGCAGCTCCAAACAGACGATGAACAACATGAAAGTAGAGTATCCAGGGATATAGAGAAAGTATCCCGCTTTGTTGATAATGATCATGAGTTGTCTTCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGAGACAAGGGACGAGATTGTTGGATGATGGTGATTGCCAAGAGCAGACTAATTGCTCCACAGGAAAAGAAAGTGGGGAACATGAAGGAGAATCTAAATCTGTCGAAACTACATGTGGTAATTTGAATGCTGAAAGTACTCCTCAACAAAGGAAATCTGAAATTACTTTGGTTAGGGAGGAAGTTGAAAGTACTCCTCAACAAAGGAAATCTGAAATTACTTTGGTTAAGGAGGAAGTGGATATTGTTGATGCTTCCAAGGGTGAGAGTGTTGCTTCTCCACATACACAAAAAAGAAAAGTTCTAAGCAACACTGACAGAAATACAAAAGCTTTAATCAAAGTAGGTGTTCATAGTGATTCATGTGAGATAAGAGGAAATCAGAAAAAGATAAAAGTAGACTGGACACCTGAGCTGCACAAAACGTTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCAAGCCATTCCTTCTCGAATATTGGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTCCAGAAGTATAGAATGCATAAGAGACAAATCTTGCCCAAGGAAGAACGAAAATGGTTGAATCTAAGAGAAAGGAGCTATTGTGTTAAAAGACCAATTATGGCATTTCCTCCATATCATTCTAATCACACCCTTCCTCTGCCTCCTGTATATCCTATGTGGGGACAATCTGGCAGTCCAACGGCTGGCATGCAGATTTGGGGCTCTCCAGGTTATCCCTTTTGGCATACTACTGCTGAAAATTGGCACTGGAAACCATTTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCATTACCACCTCCTCAAACTCCTGGTTTTCCCTACTCTCAGAATATGCCTTCGTTGCTCAATGCTGATGCAGTGGATCACACATTTACCATGCCACAAAGTTCCTTCGAGCATTATCCGGCAGAGGAGGTAGTTGACAAGGTGGTGAAAGAGGCAATAAGCAAACCATGGCTACCCTTGCCCTTGGGTTTGAAACCTCCTTCCCCAGATAGTGTGTTGGCTGAGCTATCCAGGCAAGGCATTTCCAACATCCCTCCAAAGGGTTCAAATTCATGCTGA | 1716 | 0.433 | MVFSANDLQEWKDFPKGLKVLLLERDNISAAEIRAKLEAMDYNVSTFCEENEALSAISSGLESFHIAIVEVSSSSGQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNARASILSESLKPVKESVVSMLQLQTDDEQHESRVSRDIEKVSRFVDNDHELSSGNDKYPAPSTPQLRQGTRLLDDGDCQEQTNCSTGKESGEHEGESKSVETTCGNLNAESTPQQRKSEITLVREEVESTPQQRKSEITLVKEEVDIVDASKGESVASPHTQKRKVLSNTDRNTKALIKVGVHSDSCEIRGNQKKIKVDWTPELHKTFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQILPKEERKWLNLRERSYCVKRPIMAFPPYHSNHTLPLPPVYPMWGQSGSPTAGMQIWGSPGYPFWHTTAENWHWKPFPGMHADAWGCPVLPLPPPQTPGFPYSQNMPSLLNADAVDHTFTMPQSSFEHYPAEEVVDKVVKEAISKPWLPLPLGLKPPSPDSVLAELSRQGISNIPPKGSNSC* | 572 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso5g0609 | 571 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 329 | 388 | IPR017930 | - | |
Gso5g0609 | 571 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 | 1 | 569 | - | - | |
Gso5g0609 | 571 | SMART | REC_2 | 18 | 128 | IPR001789 | GO:0000160 | |
Gso5g0609 | 571 | MobiDBLite | consensus disorder prediction | 237 | 255 | - | - | |
Gso5g0609 | 571 | MobiDBLite | consensus disorder prediction | 193 | 223 | - | - | |
Gso5g0609 | 571 | SUPERFAMILY | Homeodomain-like | 331 | 389 | IPR009057 | - | |
Gso5g0609 | 571 | PANTHER | TRANSCRIPTION ACTIVATOR GLK1 | 1 | 569 | IPR044825 | GO:0003700|GO:0045893 | |
Gso5g0609 | 571 | Gene3D | - | 15 | 135 | - | - | |
Gso5g0609 | 571 | ProSiteProfiles | Response regulatory domain profile. | 19 | 132 | IPR001789 | GO:0000160 | |
Gso5g0609 | 571 | Pfam | Myb-like DNA-binding domain | 335 | 384 | IPR001005 | - | |
Gso5g0609 | 571 | MobiDBLite | consensus disorder prediction | 161 | 255 | - | - | |
Gso5g0609 | 571 | SUPERFAMILY | CheY-like | 16 | 138 | IPR011006 | - | |
Gso5g0609 | 571 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 332 | 387 | IPR006447 | GO:0003677 | |
Gso5g0609 | 571 | MobiDBLite | consensus disorder prediction | 163 | 190 | - | - | |
Gso5g0609 | 571 | Gene3D | - | 329 | 390 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso5g0609 | Gso-Chr5 | 7312526 | 7319417 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso5g0609 | 1 | 571 | Response Regulator Gene Family | AT4G18020 | 48.689 | 4.73e-140 | 415 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Gso5g0609 | Myb_DNA-binding | 3.1e-08 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso5g0609 | - | - | gmx:100820385 | 1122.46 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso5g0609 | 5 | 7312526 | 7319417 | Gso17g1290 | 17 | 12764097 | 12770963 | GST | |
Gso1g1720 | 1 | 53970993 | 53977647 | Gso5g0609 | 5 | 7312526 | 7319417 | PCT | |
Gso11g0357 | 11 | 3048026 | 3054712 | Gso5g0609 | 5 | 7312526 | 7319417 | PCT | |
Gso5g0609 | 5 | 7312526 | 7319417 | Gso1g1720 | 1 | 53970993 | 53977647 | PCT | |
Gso5g0609 | 5 | 7312526 | 7319417 | Gso11g0357 | 11 | 3048026 | 3054712 | PCT |