Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0609 ATGGTTTTCTCTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGGCTCAAGGTTCTTCTCCTTGAGAGAGACAACATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTACAATGTTTCTACATTCTGTGAGGAGAATGAAGCCTTGTCAGCAATCTCAAGTGGACTCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGTGGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCTTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGAAAACCACTATCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCCAGGGCAAGCATCCTGTCTGAATCACTTAAACCTGTCAAAGAATCTGTAGTGTCCATGTTGCAGCTCCAAACAGACGATGAACAACATGAAAGTAGAGTATCCAGGGATATAGAGAAAGTATCCCGCTTTGTTGATAATGATCATGAGTTGTCTTCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGAGACAAGGGACGAGATTGTTGGATGATGGTGATTGCCAAGAGCAGACTAATTGCTCCACAGGAAAAGAAAGTGGGGAACATGAAGGAGAATCTAAATCTGTCGAAACTACATGTGGTAATTTGAATGCTGAAAGTACTCCTCAACAAAGGAAATCTGAAATTACTTTGGTTAGGGAGGAAGTTGAAAGTACTCCTCAACAAAGGAAATCTGAAATTACTTTGGTTAAGGAGGAAGTGGATATTGTTGATGCTTCCAAGGGTGAGAGTGTTGCTTCTCCACATACACAAAAAAGAAAAGTTCTAAGCAACACTGACAGAAATACAAAAGCTTTAATCAAAGTAGGTGTTCATAGTGATTCATGTGAGATAAGAGGAAATCAGAAAAAGATAAAAGTAGACTGGACACCTGAGCTGCACAAAACGTTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCAAGCCATTCCTTCTCGAATATTGGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTCCAGAAGTATAGAATGCATAAGAGACAAATCTTGCCCAAGGAAGAACGAAAATGGTTGAATCTAAGAGAAAGGAGCTATTGTGTTAAAAGACCAATTATGGCATTTCCTCCATATCATTCTAATCACACCCTTCCTCTGCCTCCTGTATATCCTATGTGGGGACAATCTGGCAGTCCAACGGCTGGCATGCAGATTTGGGGCTCTCCAGGTTATCCCTTTTGGCATACTACTGCTGAAAATTGGCACTGGAAACCATTTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCATTACCACCTCCTCAAACTCCTGGTTTTCCCTACTCTCAGAATATGCCTTCGTTGCTCAATGCTGATGCAGTGGATCACACATTTACCATGCCACAAAGTTCCTTCGAGCATTATCCGGCAGAGGAGGTAGTTGACAAGGTGGTGAAAGAGGCAATAAGCAAACCATGGCTACCCTTGCCCTTGGGTTTGAAACCTCCTTCCCCAGATAGTGTGTTGGCTGAGCTATCCAGGCAAGGCATTTCCAACATCCCTCCAAAGGGTTCAAATTCATGCTGA 1716 0.433 MVFSANDLQEWKDFPKGLKVLLLERDNISAAEIRAKLEAMDYNVSTFCEENEALSAISSGLESFHIAIVEVSSSSGQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNARASILSESLKPVKESVVSMLQLQTDDEQHESRVSRDIEKVSRFVDNDHELSSGNDKYPAPSTPQLRQGTRLLDDGDCQEQTNCSTGKESGEHEGESKSVETTCGNLNAESTPQQRKSEITLVREEVESTPQQRKSEITLVKEEVDIVDASKGESVASPHTQKRKVLSNTDRNTKALIKVGVHSDSCEIRGNQKKIKVDWTPELHKTFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQILPKEERKWLNLRERSYCVKRPIMAFPPYHSNHTLPLPPVYPMWGQSGSPTAGMQIWGSPGYPFWHTTAENWHWKPFPGMHADAWGCPVLPLPPPQTPGFPYSQNMPSLLNADAVDHTFTMPQSSFEHYPAEEVVDKVVKEAISKPWLPLPLGLKPPSPDSVLAELSRQGISNIPPKGSNSC* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0609 571 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 329 388 IPR017930 -
Gso5g0609 571 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 569 - -
Gso5g0609 571 SMART REC_2 18 128 IPR001789 GO:0000160
Gso5g0609 571 MobiDBLite consensus disorder prediction 237 255 - -
Gso5g0609 571 MobiDBLite consensus disorder prediction 193 223 - -
Gso5g0609 571 SUPERFAMILY Homeodomain-like 331 389 IPR009057 -
Gso5g0609 571 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 569 IPR044825 GO:0003700|GO:0045893
Gso5g0609 571 Gene3D - 15 135 - -
Gso5g0609 571 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Gso5g0609 571 Pfam Myb-like DNA-binding domain 335 384 IPR001005 -
Gso5g0609 571 MobiDBLite consensus disorder prediction 161 255 - -
Gso5g0609 571 SUPERFAMILY CheY-like 16 138 IPR011006 -
Gso5g0609 571 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 332 387 IPR006447 GO:0003677
Gso5g0609 571 MobiDBLite consensus disorder prediction 163 190 - -
Gso5g0609 571 Gene3D - 329 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0609 Gso-Chr5 7312526 7319417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0609 1 571 Response Regulator Gene Family AT4G18020 48.689 4.73e-140 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso5g0609 Myb_DNA-binding 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0609 - - gmx:100820385 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0609 5 7312526 7319417 Gso17g1290 17 12764097 12770963 GST
Gso1g1720 1 53970993 53977647 Gso5g0609 5 7312526 7319417 PCT
Gso11g0357 11 3048026 3054712 Gso5g0609 5 7312526 7319417 PCT
Gso5g0609 5 7312526 7319417 Gso1g1720 1 53970993 53977647 PCT
Gso5g0609 5 7312526 7319417 Gso11g0357 11 3048026 3054712 PCT