Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0603 ATGACAAACAAATTCATGACAGATCCAGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAACAATTTTTTGTTGCCGTTGAAAGGGAGGAATGGAAGTTTGATACCCTCTTTGATCTTTATGATACCCTCACTATCACTCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTGTCTCATCAATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCATGCTGGAACAACCCGTGTACTAATAACAACTGATGTTTGGGCCCGTGCTCTTGATGTACAGCAGGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGTGAGCTTTACTACATTCATCGAATTGGCCATTCTGGACGTTTTGGAAGAAAGGACAATTCTTAG 456 0.3882 MTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLFDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFHAGTTRVLITTDVWARALDVQQVSLVINYDLPNNRELYYIHRIGHSGRFGRKDNS* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0603 151 Gene3D - 16 151 IPR027417 -
Gso5g0603 151 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 23 151 IPR001650 -
Gso5g0603 151 Pfam Helicase conserved C-terminal domain 40 146 IPR001650 -
Gso5g0603 151 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 149 - -
Gso5g0603 151 SMART helicmild6 64 146 IPR001650 -
Gso5g0603 151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 149 IPR027417 -
Gso5g0603 151 CDD SF2_C_DEAD 24 148 - -
Gso5g0603 151 PANTHER EUKARYOTIC INITIATION FACTOR 4A-III 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0603 Gso-Chr5 7201038 7202188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0603 1 148 Eukaryotic Initiation Factors Gene Family AT3G19760 87.838 9.07e-94 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0603 K13025 - gsj:114411086 311.227