Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0597 ATGGCTCTCTCTCTTTTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTATGGCAGATACTTCATTTGTTCAATCTCGTGCAGCATTTTACCCAAACTCTCAAGAAAATGGCACAGACGTTGGTGCATGTGAATTTGGTTCCTTTGGTGCCACTGTTAATGGTGGGGACGTATCAGCTGCATCTAATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGATGTGGCAATAGTGCTTTATGCTCAGGCAATGGTGTGACTGTGGTTATAACTGACCAAGGCTCAGGTCATAACACTGACTTCATTCTTAGCCAACGAGCCTTTGGGAGAATGGCTCTGAACACTGACGCAGCTGCTTCTCTATTAGCTCTTGGTGTTGTTGATATTCAGTATAGACGTGTTTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATACATGAGAGCAGCAACAACCCTCACTATTTGGCTTTTGTCATATGGTTTCAACAAGGAAATAGAGACATAACTGCTGTCCAGATTTGTGAGACTCAGAACTTTGTGTGCAAGTTACTGGACCGGAGTCATGGGGCAGTTTGGACCACTACAGCTCCACCTAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTCCTGAAGAAGAGGGAGAAGAAACATGGGTGGTTCCTGTTAACAAGATACCACAAGACTGGAAGGCTGGACAAACGTACGACTTAGGGGTACAAGTGGACCAATAG 753 0.4436 MALSLLCPLLATFLFMQTMADTSFVQSRAAFYPNSQENGTDVGACEFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCGNSALCSGNGVTVVITDQGSGHNTDFILSQRAFGRMALNTDAAASLLALGVVDIQYRRVSCSYPNKNITVKIHESSNNPHYLAFVIWFQQGNRDITAVQICETQNFVCKLLDRSHGAVWTTTAPPSGPLSLRMLFSPEEEGEETWVVPVNKIPQDWKAGQTYDLGVQVDQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0597 250 SUPERFAMILY PHL pollen allergen 146 243 IPR036749 -
Gso5g0597 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Gso5g0597 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 244 IPR007117 -
Gso5g0597 250 Gene3D - 143 248 IPR036749 -
Gso5g0597 250 Gene3D - 10 142 IPR036908 -
Gso5g0597 250 SUPERFAMILY Barwin-like endoglucanases 12 145 IPR036908 -
Gso5g0597 250 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Gso5g0597 250 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Gso5g0597 250 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Gso5g0597 250 Pfam Lytic transglycolase 62 136 IPR009009 -
Gso5g0597 250 Pfam Expansin C-terminal domain 148 219 IPR007117 -
Gso5g0597 250 PANTHER EXPANSIN-B3 4 249 - -
Gso5g0597 250 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 4 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0597 Gso-Chr5 7107340 7109654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0597 2 243 Expansin Gene Family AT4G17030 41.975 7.52e-57 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0597 - - gmx:100812555 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0597 5 7107340 7109654 Gso17g1282 17 12618455 12620740 GST
Gso1g1726 1 54033957 54036830 Gso5g0597 5 7107340 7109654 PCT
Gso11g0351 11 3013850 3015956 Gso5g0597 5 7107340 7109654 PCT
Gso5g0597 5 7107340 7109654 Gso1g1726 1 54033957 54036830 PCT
Gso5g0597 5 7107340 7109654 Gso11g0351 11 3013850 3015956 PCT