Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0569 ATGGAGGAACGGTACGAGCCATTGAAGGAGCTTGGAGCTGGGAATTTTGGTGTGGCAAGGTTGGCCAAAGACAAAAAAACTGGAGAGCTTGTTGCGGTCAAATACATAGAGAGGGGCAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATAATCAGGTTCAAAGAGGTGTTACTGACCCCTACACATTTAGCTATTGTCTTGGAGTATGCTTCAGGTGGTGAACTTTTTGAGAGGATATGTACTGCTGGTCGATTTAGCGAAGATGAGGCAAGATATTTCTTCCAGCAGCTAATATCTGGGGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGATCTAAAATTGGAAAACACTCTCTTGGACGGAAATCCATCTCCCCGGCTTAAAATTTGTGACTTTGGTTACTCCAAGTCTGCTTTACTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTCTGTCACGAAAGGAGTATGATGGAAAGATTTCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTCATGTTAGTTGGTGCATACCCATTTGAAGATCCAGAAGATCCTAGAAATTTCAGAAAGACTATTGGGAGAATAATAGGTGTTCAGTACTCCATACCCGACTATGTTCGAGTTTCTTCTGACTGTAGGAATCTTCTCTCTCGCATCTTTGTTGCTGATCCTGCCAAGAGGATCACCATCCCGGAGATAAAACAGTATCCTTGGTTTCTGAAGAATATGCCTAAAGAGATCATTGAAGCCGAAAGAAAAGGATTCGAGGAAACAACGAAAGATCAACCAAGCCAGAAGGTGGAAGAAATCATGAGGATCATACAAGAGGCAAGGATACCAGGACAAGGATCCAAAGCAGGAGAAGTTGGACAAGTTGGCACTGGATCATTAGATATTGAGGATGATGAGGAAATTGATGTTAGTGGTGACTATGAACAAGTGTGA 1011 0.4204 MEERYEPLKELGAGNFGVARLAKDKKTGELVAVKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSSDCRNLLSRIFVADPAKRITIPEIKQYPWFLKNMPKEIIEAERKGFEETTKDQPSQKVEEIMRIIQEARIPGQGSKAGEVGQVGTGSLDIEDDEEIDVSGDYEQV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0569 336 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Gso5g0569 336 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0569 336 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0569 336 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Gso5g0569 336 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 329 - -
Gso5g0569 336 CDD STKc_SnRK2 4 260 - -
Gso5g0569 336 MobiDBLite consensus disorder prediction 303 336 - -
Gso5g0569 336 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0569 336 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
Gso5g0569 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Gso5g0569 336 MobiDBLite consensus disorder prediction 319 336 - -
Gso5g0569 336 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Gso5g0569 336 PANTHER SERINE/THREONINE KINASE 3 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0569 Gso-Chr5 6651202 6655282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0569 4 279 CBL-interacting serine-threonine protein kinases AT4G24400 42.456 8.92e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gso5g0569 Pkinase 8.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0569 K14498 - gmx:100817713 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0569 5 6651202 6655282 Gso17g1254 17 12302205 12306173 GST
Gso1g1740 1 54229523 54233368 Gso5g0569 5 6651202 6655282 PCT
Gso11g0333 11 2800060 2803975 Gso5g0569 5 6651202 6655282 PCT
Gso5g0569 5 6651202 6655282 Gso1g1740 1 54229523 54233368 PCT
Gso5g0569 5 6651202 6655282 Gso11g0333 11 2800060 2803975 PCT