Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0556 ATGGAGCTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTGTGTTATTGCCAGGAATATACTAAATCCAGGGCAACCTTTTATAGTACCTCTGATGGCTATGGGACTCCAACCGGAGCTTGTGGCTTTGGTGAATATGGAAGGAAAATGAATTGGTATGGTGGAAGAGTGGCTGGGGTGTCTGGGCTGTGGAGGAATGGAGCTGGCTGTGGCACATGTTATCAGGTGAGATGCCTAGTACCAGAATTATGTGATACCAATGGAGCATACCTGGTGGCAACAGACCAAGGTTATGGAGACAGAACAGACTTCGTCATGAGCCCACGCGCCTTCTTGAAATTGGGACGCAATGAATATTCATCTGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCATGTACATACACCGGCAATGTCTTGTTCCACATCAAGGAAACTAGCACCAACCCTGGTTACTTTGCTTTGGTCATTCTCAATGTTAATGGCATACACGATGTCACTGCTGTTGAATTGTATCAGATGGGACAATGGAAGTCACTTAACAGGAACTCTGGAGCAGTGTTTGACTTTCCTAACCCACCGAGTGGCGAAATCCGGTTGAGGTTTAGGGTGAGTGGCATGTCTGATTGGGTGGATCCCATGATTGTCATACCTAGTAACTGGCAACCTGGAAATACTTATGCCACCAAGGTTCAGCTTAAATAG 744 0.4543 MELSFKHQLGLVCVILLFPALCYCQEYTKSRATFYSTSDGYGTPTGACGFGEYGRKMNWYGGRVAGVSGLWRNGAGCGTCYQVRCLVPELCDTNGAYLVATDQGYGDRTDFVMSPRAFLKLGRNEYSSEELKKYGTVDIEYKRVPCTYTGNVLFHIKETSTNPGYFALVILNVNGIHDVTAVELYQMGQWKSLNRNSGAVFDFPNPPSGEIRLRFRVSGMSDWVDPMIVIPSNWQPGNTYATKVQLK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0556 247 Pfam Lytic transglycolase 64 141 IPR009009 -
Gso5g0556 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 242 IPR007117 -
Gso5g0556 247 Pfam Expansin C-terminal domain 153 231 IPR007117 -
Gso5g0556 247 Gene3D - 19 147 IPR036908 -
Gso5g0556 247 Gene3D - 150 246 IPR036749 -
Gso5g0556 247 SUPERFAMILY Barwin-like endoglucanases 13 151 IPR036908 -
Gso5g0556 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Gso5g0556 247 PANTHER EXPANSIN-B3 4 247 - -
Gso5g0556 247 SUPERFAMILY PHL pollen allergen 151 241 IPR036749 -
Gso5g0556 247 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Gso5g0556 247 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Gso5g0556 247 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Gso5g0556 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Gso5g0556 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Gso5g0556 247 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0556 Gso-Chr5 6416071 6418869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0556 1 246 Expansin Gene Family AT4G17030 43.651 1.06e-70 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0556 - - gmx:100777265 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0556 5 6416071 6418869 Gso17g1241 17 12129012 12131732 GST