Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0554 ATGGAACTCAGTTTTAGGCCACAACTTGGGCTTGTTTGTGTGATATTGCTGTTCCCTGCACTGTGTAACTGCCAGGAATATTTCACCAAATCAAGAGCAACCTATTATGGTACCCCTGATGGCTACGGGACTCCAACGGGAGCTTGTGGCTATGGCGAATTTGGACGCTTGATGGATGGGTATGGTGGAAGAGTCACTGGGGTGTCTGGGCTGTGGAGGAATGGAGCTGGCTGTGGTACATGTTATCAGGTAAGGTGCAAAATACCAAAATTGTGCGATGTGAATGGAGTAACCCTAGTGGTAACAGACTATGGTCAGGGAGACGGAACAGACTTCATCATGAGCCCACGTGCCTTCTCAAAATTGGGAGTGAATAAAATAGCATCTGAAGAGATTAAGAAAAAAGGCACAGTGGATATTGAATTCAAAAGGGTTCCCTGTAAATACACCGGCAATGTCTTGTTTCATGTCCAGGAAACTAGCAGCAACCCTGGTTACTTCGCTGTTGTCATTCTCTTTGTAAACGGAAAATACGACCTCACTGATGTTGAAATGTGGCAGAAGAGTCAACAACGATGGGAACCACTACGCAGGTCCTATGGGGCAGTGTTTGACTTTGCTAACCCACCAAGTGGTGAAATCCTCTTGAGGTTTAAAGCGGGTTCTTGGAAGCTGGCGAAAATCCCTGCTAATTGGAAGCCTGGAGCTACTTATGACACCAAGGTTCAGTTTTAA 735 0.4599 MELSFRPQLGLVCVILLFPALCNCQEYFTKSRATYYGTPDGYGTPTGACGYGEFGRLMDGYGGRVTGVSGLWRNGAGCGTCYQVRCKIPKLCDVNGVTLVVTDYGQGDGTDFIMSPRAFSKLGVNKIASEEIKKKGTVDIEFKRVPCKYTGNVLFHVQETSSNPGYFAVVILFVNGKYDLTDVEMWQKSQQRWEPLRRSYGAVFDFANPPSGEILLRFKAGSWKLAKIPANWKPGATYDTKVQF* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0554 244 SUPERFAMILY PHL pollen allergen 152 239 IPR036749 -
Gso5g0554 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 152 IPR007112 -
Gso5g0554 244 Pfam Expansin C-terminal domain 154 222 IPR007117 -
Gso5g0554 244 Gene3D - 149 244 IPR036749 -
Gso5g0554 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 240 IPR007117 -
Gso5g0554 244 PANTHER EXPANSIN-B3 4 243 - -
Gso5g0554 244 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gso5g0554 244 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Gso5g0554 244 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Gso5g0554 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Gso5g0554 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Gso5g0554 244 Pfam Lytic transglycolase 66 141 IPR009009 -
Gso5g0554 244 Gene3D - 20 148 IPR036908 -
Gso5g0554 244 SUPERFAMILY Barwin-like endoglucanases 15 152 IPR036908 -
Gso5g0554 244 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0554 Gso-Chr5 6386201 6388138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0554 1 242 Expansin Gene Family AT4G17030 47.012 5.74e-74 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0554 - - gmx:100813628 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0554 5 6386201 6388138 Gso17g1238 17 12111663 12113881 GST