Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0553 ATGGAACTCAGTTTTAAGCACCAACTTGGGCTAGTTTGTGTCATATTGTTCTTCCCTGCACTGTGTAACTGTCAGGAATATATTGGCCCTGTTGATGATTACTGGAATCCAATTGGAGCTTGTGGGTTCGGCGAATATGGAAAGACGGTGAATAATGGCATTGTCGCAGCAGTGTCTGAGCCGCTATGGAGGGATGGAGCTGGCTGTGGTACATGCTATCAGGTATGCTGCAAACTGCAATGCTGCGATGAGAAGGGAGTATACGTGGTAGTAAGTGATGCACAGGGAGACAGAAGAAACTCCAGCTTGACCTTGAGCCCTGGAGCCTTGTCAATATTAGTACACAACAAACCTGGATGTGCAAATCGGATCAAACATGACATGGGCGATATTGTAATCAAAAGGGTGCCCTGTAGATACCCTGGCAACATCAAGCTCCGTGTCCAGGAGAGCAGCAAAAACCCAGGCTACTTTGCAGTTGTCATTCTCGACGTAAATGGAATACGCGACATCACTGCAGTTGAGATGTGGCTGAAGAGTCAACAAAGATGGGAACCACTGCGCAGGTCCTATGGGGCAGTGTTTGACTTTGCTAACCCACCCAGTGGTGAAATCCTCTTGAGGTTTAAAGCGGGCTTTTGGAAGCAGGCGAAAATCCCTGCTAATTGGAAGCCTGGAGCAACTTATGACACCAAAGTTCAGATCCCAGGAACATATTACAAATAA 726 0.4711 MELSFKHQLGLVCVILFFPALCNCQEYIGPVDDYWNPIGACGFGEYGKTVNNGIVAAVSEPLWRDGAGCGTCYQVCCKLQCCDEKGVYVVVSDAQGDRRNSSLTLSPGALSILVHNKPGCANRIKHDMGDIVIKRVPCRYPGNIKLRVQESSKNPGYFAVVILDVNGIRDITAVEMWLKSQQRWEPLRRSYGAVFDFANPPSGEILLRFKAGFWKQAKIPANWKPGATYDTKVQIPGTYYK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0553 241 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Gso5g0553 241 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Gso5g0553 241 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Gso5g0553 241 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Gso5g0553 241 PANTHER EXPANSIN-B3 4 235 - -
Gso5g0553 241 SUPERFAMILY Barwin-like endoglucanases 22 163 IPR036908 -
Gso5g0553 241 SUPERFAMILY PHL pollen allergen 143 230 IPR036749 -
Gso5g0553 241 Gene3D - 139 232 IPR036749 -
Gso5g0553 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 143 IPR007112 -
Gso5g0553 241 Pfam Expansin C-terminal domain 144 211 IPR007117 -
Gso5g0553 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 231 IPR007117 -
Gso5g0553 241 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 235 - -
Gso5g0553 241 Gene3D - 26 138 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0553 Gso-Chr5 6381208 6383753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0553 1 235 Expansin Gene Family AT4G17030 40.079 9.38e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0553 - - gmx:100787606 514.998