Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0551 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACTCCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTGCATGCCCGGGCAGAAAATGTTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAGAGCATTTCATTAAATAAGAACAAAGAAGTGAAATTAGCCAAACGAAAGCAAAACTATGATAATGCTGCATCTGGAGGGTTTGTTCCTGATTATAGTCAAGGATACCAAAAAGTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGGACTGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCCAAAAAGAGGACATGTGCAGGTCGTCCGAAGCCCTCATCTGTTGAGAAGCTCACAAGAGACCTGTGCACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGATACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCTGAGGCTAGCTCTCTCTCAGTTGATAATAAACAATGCCTAATGAATGAAGCATATTCATTTTCTAGTACCATTCCTATGTACAGTGATCGCAGTGGCATGAACTTCTCATCTCATGGAGTTGAAAAGATCAAAAACTCAGCAGGCCAAATCATGAAACAAGAGAAACTTGAAAGGGACAAGTCTCAGCTTGAAAAACTACAAGTTCCTGGAAATCATGATTCACCACTGTGCTCAATAGATTTAAATGATGTAGTCAACTATGAGGAGTTTATGAGAAACTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCGGTGGTTGATACTGCTAAATTTCCTGATAGCCTTAGAAACATGTTCAATAGCTTCCAATTCAAGGAGAACTTAATCTATTTTCAGCAACTTCTTGGGGAAGGAGTCTTTGACATCTCTTTGTTGGGGGCAAAACCTGAAGAATGGAAGACATTAAAAAGGCTTGCGTTATCTAATCTGTCAAAGTCAAAATGGGTAGAACACTATAATTTCCTGAAGAAATGTGAAAACAAATCTGGAAAATCTATTGGTTTGGGATCTACTGCTATGGAATCTAGTTATGTTACAACTGCCAAGAGAATGCGTGAGCATGACAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGAAGCCCCAAAAGGGTGTTCATAAAGCCTAGCTGTGAGGTCAAAGAAGTTGTAGAAGAAGGCTCTAGCTTCAGTCCAAAAAGCCTATTTGCTTTACCCCATGGTGTTGGTAGCTTGCACATGTTGGATTCTTTCAACTTTGTTGGTGAGAGTTCTGAAGATCTGCTGTTAGAGGTGCCTTCTAACAGTTCTTTTCCACAGGCAGAGCTTCTGCACCCATCTTTAAGCTATGGTGCTCAGGTCAGCACCACTAGTAGCTCAGTACACTCTCTTGTTACTCATCCTTAA 1629 0.4162 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVDYEDQKVSRVKSISLNKNKEVKLAKRKQNYDNAASGGFVPDYSQGYQKVVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCAGRPKPSSVEKLTRDLCTILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPMYSDRSGMNFSSHGVEKIKNSAGQIMKQEKLERDKSQLEKLQVPGNHDSPLCSIDLNDVVNYEEFMRNLTNEEQQQLLKYLPVVDTAKFPDSLRNMFNSFQFKENLIYFQQLLGEGVFDISLLGAKPEEWKTLKRLALSNLSKSKWVEHYNFLKKCENKSGKSIGLGSTAMESSYVTTAKRMREHDSQNQNFPELKTTMRSPKRVFIKPSCEVKEVVEEGSSFSPKSLFALPHGVGSLHMLDSFNFVGESSEDLLLEVPSNSSFPQAELLHPSLSYGAQVSTTSSSVHSLVTHP* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0551 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Gso5g0551 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 542 IPR044589 -
Gso5g0551 542 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 542 - -
Gso5g0551 542 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Gso5g0551 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Gso5g0551 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Gso5g0551 542 MobiDBLite consensus disorder prediction 106 132 - -
Gso5g0551 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Gso5g0551 542 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Gso5g0551 542 Pfam Asx homology domain 287 375 IPR028020 -
Gso5g0551 542 Gene3D - 283 391 IPR038108 -
Gso5g0551 542 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Gso5g0551 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0551 Gso-Chr5 6346030 6351808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0551 1 519 C2C2-Gata Transcription Factor Family AT4G17570 53.061 2.45e-159 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso5g0551 ASXH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0551 - - gmx:100799745 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0551 5 6346030 6351808 Gso17g1235 17 12072623 12078486 GST
Gso1g1747 1 54283213 54289126 Gso5g0551 5 6346030 6351808 PCT
Gso11g0327 11 2749664 2755476 Gso5g0551 5 6346030 6351808 PCT
Gso5g0551 5 6346030 6351808 Gso1g1747 1 54283213 54289126 PCT
Gso5g0551 5 6346030 6351808 Gso11g0327 11 2749664 2755476 PCT