Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0540 ATGTACGGACAGAGTAGTAGTAGCAGTAGTTCTTACGAATCGGATTTGGCGCTGTTGGATTCGATTCGGCACCACTTGCTGGGCGAGTCCGAATCCATATTCGGCGCCCCGAATTTCGGGTCGGGTCGGAGCTCCAGTTTCAGCAGCTTGGACTCGTGTTTGAGCGACAATTGGGGCGAGCTTCCGTTTAAGGAGGACGATACAGAAGACATGGTGTTGTACGGCGTTCTCCGTGACGCCGTTAACGTCGGGTGGGTCCCATCTCTCGATGCCGGGTCGCCCGAGAGCGTGTCGTCGGGTTTTCCGGCGGTGAAGCTGGAGCCGGACTTGATGCCGGCGCTGATAAGTCCGTGTCCGCCTCCGGCGGCTGCGGCGGAGGAGAAGAAGGTTGTTCCGGCGAAGGGGAAGCACTACCGCGGCGTGCGGCAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGGCGAAGAACGGAGCAAGGGTTTGGCTGGGGACGTTTGAGACGGCGGAGGACGCGGCGTTGGCGTACGACCGCGCCGCCTACCGGATGAGGGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGGGTTAACTCCGGCGAGCCCGATCCGGTGAGGGTGAAGTCGAAGCGGTCGTCGTCGCCAGAGAGTGCGGCGGCGCTGCCGGCGAAGAGAAAGAAAGTTGTGGTGGTGGGGACGGTGCAAGAGCAAGTGGGGAGTCAAGTGGCAGAGTGTACACGTGGCGAGCAGTTATTGGTTAGCTGA 768 0.6172 MYGQSSSSSSSYESDLALLDSIRHHLLGESESIFGAPNFGSGRSSSFSSLDSCLSDNWGELPFKEDDTEDMVLYGVLRDAVNVGWVPSLDAGSPESVSSGFPAVKLEPDLMPALISPCPPPAAAAEEKKVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVKSKRSSSPESAAALPAKRKKVVVVGTVQEQVGSQVAECTRGEQLLVS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0540 255 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Gso5g0540 255 Gene3D AP2/ERF domain 136 198 IPR036955 GO:0003700|GO:0006355
Gso5g0540 255 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Gso5g0540 255 PANTHER DNA-BINDING DOMAIN 31 242 IPR044808 GO:0003700|GO:0009873
Gso5g0540 255 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Gso5g0540 255 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Gso5g0540 255 SUPERFAMILY DNA-binding domain 137 197 IPR016177 GO:0003677
Gso5g0540 255 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Gso5g0540 255 PANTHER BNAANNG21280D PROTEIN 31 242 - -
Gso5g0540 255 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0540 Gso-Chr5 6155643 6156936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0540 7 254 AP2-EREBP Transcription Factor Family AT4G17500 53.358 3.51e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g0540 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0540 K09286 - gmx:100803653 421.394