Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0539 ATGGCTAACGCTGCTGAAGTTTCAGCGTTGAAACGCATCAAGTTGCATCTTTTGGGTGAACTCTCTCCACTGGCCACTCCCCAAAACAAATTTGACCAAACAAACCCTAGCCCCTCTGAATCTTCCAATTCCGAATCTTCTTCTATTTCTCTTAACCACTACTTCACTGACCTCCTCGAACCCGAAATTGAATTTCCTCTCTTCGAATTCGATTCCAAACCCCAAGTAATCGACCTCGAAACCCCGAAAACCCTAATTTCAGCTGAGAAGAAGCCTCAATTTAATCGGAAACCGTCGCTGCTAATCGCTGTTCCGAAGAAGACCGAGTGGATCCAATTCGGAAACCCTGAGGTGGCGGCGCCGGAGAACCAGCCTGAGAAGAAGCACTACAGAGGTGTCCGTCAGCGGCCGTGGGGCAAGTTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGGTCTAGGGTTTGGCTCGGAACCTTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGAGCCGCCTTCAGGCTCCGCGGCTCCAAGGCCATCCTCAACTTCCCCCTCGAAGTTAACACCGCGGCGGAGACCGTCTCCGTCGCCGCCGTCGACGTCGAGAGGAAGCGCCGCCGCGAGGAGGAGGAGGTGGTGGTGGAGGATGTAAAGGCGGTGGTGAAGAAGGAGAAAATAACGGAGCATGATGTGAGTTGTTTTAGGGGGATGCCGTTAACGCCGTCTATGTGGACCGGGTTCTGGGACAGTGACGTCAAGGATATTTTCAACATTCCGCCGTTGTCGCCGTTATCTCCTTTTGGATTTTCACCGCTCGTGGCTGTGTGA 837 0.546 MANAAEVSALKRIKLHLLGELSPLATPQNKFDQTNPSPSESSNSESSSISLNHYFTDLLEPEIEFPLFEFDSKPQVIDLETPKTLISAEKKPQFNRKPSLLIAVPKKTEWIQFGNPEVAAPENQPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEVNTAAETVSVAAVDVERKRRREEEEVVVEDVKAVVKKEKITEHDVSCFRGMPLTPSMWTGFWDSDVKDIFNIPPLSPLSPFGFSPLVAV* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0539 278 SMART rav1_2 129 193 IPR001471 GO:0003700|GO:0006355
Gso5g0539 278 ProSiteProfiles AP2/ERF domain profile. 129 187 IPR001471 GO:0003700|GO:0006355
Gso5g0539 278 MobiDBLite consensus disorder prediction 26 47 - -
Gso5g0539 278 CDD AP2 128 187 IPR001471 GO:0003700|GO:0006355
Gso5g0539 278 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 265 - -
Gso5g0539 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 4 265 - -
Gso5g0539 278 MobiDBLite consensus disorder prediction 25 47 - -
Gso5g0539 278 Gene3D AP2/ERF domain 128 190 IPR036955 GO:0003700|GO:0006355
Gso5g0539 278 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Gso5g0539 278 PRINTS Ethylene responsive element binding protein signature 169 189 IPR001471 GO:0003700|GO:0006355
Gso5g0539 278 SUPERFAMILY DNA-binding domain 129 189 IPR016177 GO:0003677
Gso5g0539 278 Pfam AP2 domain 129 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0539 Gso-Chr5 6111796 6112850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0539 1 278 AP2-EREBP Transcription Factor Family AT5G47230 46.815 5.97e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g0539 AP2 5.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0539 K09286 - gmx:100800453 493.812