Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0535 ATGAGCACCAGGGAGGATAAAGTTTATGTCAATGATAATCATGTGGATGGTGGATCACAAGAAAATGCTGCCAAGTCTGAAATTGTGACCCCTGAAGGTGATAACTTAGGAGAATGGTTGAGTCTAGGCATCAAAGGAGACAATATCCCTCTGGAAGCAGCTGAACAAAACCCTGCAGATTCCCAATCAAGACCTCTCCACAATAAGGTATTCTCATGCATATACTGCACGAGAAAGTTTTACAGTTCACAAGCCTTTGGGGGTCACCAGAATGCACACAAGAGGGAAAAACAAGCAGCTAAACGAAGTTACCGATCTCATATGATGTTGACAACAACATCAATGGGCCTTGCTTACTCTTCTTTGGCATCTAGGTCACTGGGAATACAACCTCACTCGCTTGTGCACGAGCCAAGCAGAGAAAGGTCTGCTATGGCGGCTAGCTTCAGTGATGCCGGTTATTGGAATGGAATGGCGTCATGGACACCACCCTCTATGCTTGAACAAGCCGGGCATTTCTCATGGCCAGGTAGCCTTCAGTTGGAGTTGCCCAAGCAAGAATCAGATGTTAGTAAGATTGACTTAGATCTTCGGCTCTGA 600 0.4583 MSTREDKVYVNDNHVDGGSQENAAKSEIVTPEGDNLGEWLSLGIKGDNIPLEAAEQNPADSQSRPLHNKVFSCIYCTRKFYSSQAFGGHQNAHKREKQAAKRSYRSHMMLTTTSMGLAYSSLASRSLGIQPHSLVHEPSRERSAMAASFSDAGYWNGMASWTPPSMLEQAGHFSWPGSLQLELPKQESDVSKIDLDLRL* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0535 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Gso5g0535 199 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 199 - -
Gso5g0535 199 MobiDBLite consensus disorder prediction 1 30 - -
Gso5g0535 199 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gso5g0535 199 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 199 - -
Gso5g0535 199 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Gso5g0535 199 Gene3D Classic Zinc Finger 55 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0535 Gso-Chr5 6018356 6019471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0535 21 193 C2H2 Transcription Factor Family AT1G24625 33.146 3.34e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0535 - - gmx:100781198 407.912