Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0532 ATGCATATAGAGGAATTGAAGGGAGGTGAGGTGGTAGAAGGTGGGGAGGAAGGAGGATCGAGGTTTGTGGGTTATGATGCGAAAAGGGTGCTGGTTGGAGCAGGCGCTCGTGCGCTTTTCTATCCAACCCTGTTTTACAATGTCGTTAGGAATAAGATTCAGGCCGAGTTTCGATGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCCCGCTTAAAGGAGCTTGGTGTCCGTGGGGTCATCACATTGAATGAATCATATGAGACTTTGGTTCCAACGACATTATATTATGCTCATGGAATTGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCTTCATTGAATGACATTTTCCGTGCTGTGGATTTCATACATGAAAATGCATTGTCTGGACGAACTACATATGTCCATTGCAAAGCTGGACGTGGTCGTAGCACGACTATTGTTATTTGTTATCTGGTGCACCACAAAATGATGACACCTGATGCTGCATATTCTTATGTGAAATCAATTCGACCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGCTGTCCAAGAATACTACTACCATCTTATGGTGAGGAGGACCGTTGGATGTGCTCCTACAGCCAATCTATTTGTAAAAACTTCTCAGGTGGCAGCAGGTTCACGAGATCTTGTGATGTTTGATGACAATTCTGTAGTCATGGTAACAGAGTCAGATCTAGAAGGTTACAACCCAAGTAGTCAATCAGGAGCCATGGCAAGTGAAATATGGGCAGATTTAAGTGTTGTATACCGTGTACGAGTTGCTGGACAGGCAGCACTGGCGAGAATATCATGCCTTTGGCTGCGATATGGTACTACCGACCAGAAGATTTCTACGGAGAAACTGAGCAGCAGGGAAAGCAGTTGCTCAATCAGGGCTAATCACTTGGGAGAAATTAGTGTTGATATCCACGTGTACTGA 987 0.4438 MHIEELKGGEVVEGGEEGGSRFVGYDAKRVLVGAGARALFYPTLFYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVITLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLNDIFRAVDFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKMMTPDAAYSYVKSIRPRVLLASSQWQAVQEYYYHLMVRRTVGCAPTANLFVKTSQVAAGSRDLVMFDDNSVVMVTESDLEGYNPSSQSGAMASEIWADLSVVYRVRVAGQAALARISCLWLRYGTTDQKISTEKLSSRESSCSIRANHLGEISVDIHVY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0532 328 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 204 IPR029021 -
Gso5g0532 328 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Gso5g0532 328 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Gso5g0532 328 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Gso5g0532 328 Pfam Dual specificity phosphatase, catalytic domain 82 201 IPR000340 GO:0008138|GO:0016311
Gso5g0532 328 PANTHER - 1 328 - -
Gso5g0532 328 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 328 - -
Gso5g0532 328 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Gso5g0532 328 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Gso5g0532 328 CDD PTPMT1 59 201 IPR044596 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0532 Gso-Chr5 5960631 5965662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0532 28 328 Protein tyrosine phosphatase (PTP) family AT2G35680 63.462 4.18e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0532 - - gmx:100790413 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0532 5 5960631 5965662 Gso17g1220 17 11845011 11849845 GST