Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0526 ATGGTCATGGAAGAATCTAACCCATTAGACAATGAAGTTCAACCAACCACTTCATCATCCTCTTTCACCATTACTACTCCCTCTACCTCCTCTTCTTCCTCCATAGAAGAAGCCACTAACACTACAAAGGAGAAAAAGAAGAAAGCCAATAGTAATGAAGGCAAGCACCCTACGTATAGAGGAGTTCGCATGCGTCAATGGGGCAAATGGGTATCCGAAATTAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGTACTTTTCCCACGCCCGATATGGCGGCTCGAGCCCATGACGTGGCGGCTCTCACGATCAAAGGCAGCTCGGCTTACCTCAATTTCCCAGAATTAGCCGACGAGCTGCCCCGCCCCGCCAGCACCTCCCCCAAGGACATCCAAGCTGCGGCGGCTAAAGCCGCTGCCTTGGATTTCGGCCACCGAAGCCATGACGCCGAGTCCGAGCTGAGCCGAGCCGTTTCCTCCTCAATCCTCACACAAGCATCATCATCATCATCCAATTCATCATCGTTGAAGGGTGTGGATGACACATTCTTGGACCTTCCTGATCTCTCTCTCGACTTGAGCCATGGAGCCGATGAGTTTCATTATTCGTCAGCTTGGCTTGTAGCCGGAGCCGAACATATAGAGCTGGGTTTTCGGCTTGAGGATCCTTTTCTATGGGAATCATATTAA 693 0.5022 MVMEESNPLDNEVQPTTSSSSFTITTPSTSSSSSIEEATNTTKEKKKKANSNEGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELADELPRPASTSPKDIQAAAAKAAALDFGHRSHDAESELSRAVSSSILTQASSSSSNSSSLKGVDDTFLDLPDLSLDLSHGADEFHYSSAWLVAGAEHIELGFRLEDPFLWESY* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0526 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 15 215 - -
Gso5g0526 230 MobiDBLite consensus disorder prediction 9 38 - -
Gso5g0526 230 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Gso5g0526 230 MobiDBLite consensus disorder prediction 39 59 - -
Gso5g0526 230 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Gso5g0526 230 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Gso5g0526 230 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Gso5g0526 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 215 - -
Gso5g0526 230 MobiDBLite consensus disorder prediction 1 59 - -
Gso5g0526 230 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Gso5g0526 230 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Gso5g0526 230 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Gso5g0526 230 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0526 Gso-Chr5 5824387 5825592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0526 45 226 AP2-EREBP Transcription Factor Family AT2G44940 50.711 5.21e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso5g0526 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0526 - - gmx:100101914 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0526 5 5824387 5825592 Gso17g1215 17 11731769 11733126 GST
Gso11g0306 11 2571983 2572781 Gso5g0526 5 5824387 5825592 PCT
Gso5g0526 5 5824387 5825592 Gso11g0306 11 2571983 2572781 PCT