Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0524 ATGGCACCAAGGGTTAATGATGGAACAATAACAAGCAAGAGAGCAATGAACAGAGGAGCATGGACCCCAGAGGAGGACAGAAAGCTAGCCCAGTGCATTGAAATTCATGGTCCAAAGAGGTGGAAGACTGTTGCAATCAAATCAGGTTTAAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGTTGAATTATCTGAGACCCAATATCAAGAGGGGAAATATATCAGATGAAGAAGAGGATTTGATACTTAGGCTTCACAGACTTTTGGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGATAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAGAAACCAGAAAGTTCCACGAGACACGAAATTATTGGCCAGAATGATCAGAATGCTGGGGATAACCGTGCAATGTCAGAGAACGAGGTTGAAATTAATGAAAGTGGTAACTTAGATGTTAGTTTGGACGTGAACGAATTTTTCAACTTCTCTGAGGAATCCTTTGGGTTTGATTGGCTGAACAAGTACTTAGAACTTGACCAGATTCCTGAGAGCACAGAAAGATCTGAATGA 606 0.4109 MAPRVNDGTITSKRAMNRGAWTPEEDRKLAQCIEIHGPKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKVEKPESSTRHEIIGQNDQNAGDNRAMSENEVEINESGNLDVSLDVNEFFNFSEESFGFDWLNKYLELDQIPESTERSE* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0524 201 SMART sant 17 67 IPR001005 -
Gso5g0524 201 SMART sant 70 118 IPR001005 -
Gso5g0524 201 MobiDBLite consensus disorder prediction 127 147 - -
Gso5g0524 201 Gene3D - 74 143 - -
Gso5g0524 201 MobiDBLite consensus disorder prediction 1 20 - -
Gso5g0524 201 CDD SANT 20 65 IPR001005 -
Gso5g0524 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Gso5g0524 201 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Gso5g0524 201 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Gso5g0524 201 CDD SANT 75 116 IPR001005 -
Gso5g0524 201 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Gso5g0524 201 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Gso5g0524 201 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Gso5g0524 201 Gene3D - 10 71 - -
Gso5g0524 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Gso5g0524 201 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 199 - -
Gso5g0524 201 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0524 Gso-Chr5 5772079 5774477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0524 12 187 MYB Transcription Factor Family AT3G13540 47.059 9.91e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0524 Myb_DNA-binding 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0524 K09422 - gmx:100799575 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0524 5 5772079 5774477 Gso17g1213 17 11673350 11675539 GST
Gso1g1767 1 54482439 54483434 Gso5g0524 5 5772079 5774477 PCT
Gso11g0304 11 2559479 2561079 Gso5g0524 5 5772079 5774477 PCT
Gso5g0524 5 5772079 5774477 Gso1g1767 1 54482439 54483434 PCT
Gso5g0524 5 5772079 5774477 Gso11g0304 11 2559479 2561079 PCT