Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0520 ATGGGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTACCGCCAGCAACCTTCTATTGTCCGTTTGACAAGGTCTACTCGCCCAGACAAGGCTCGCCGCTTGGGTTTCAAGGCTAAGCAGGGTTATGTGATTTACCGTGTTCGTGTACGAAGGGGTGGCCGGAAGAGACCAGTTCCAAAAGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGCGCTGTTAGAAATGATCCAAGAATCAACTGGCTCTGCAACCCAGTCCATAAACACAGGGAACTGCGTGGCCTCACTTCTGCTGGGAAAAGTAACAGGGGTTTACGGGGCAGAGGACATCTCTACCACAAAAATCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACTCTTTCCCTTCGTCGCTACCGTTGA 615 0.5057 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHSAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTLSLRRYR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0520 204 MobiDBLite consensus disorder prediction 175 189 - -
Gso5g0520 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gso5g0520 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gso5g0520 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Gso5g0520 204 MobiDBLite consensus disorder prediction 164 189 - -
Gso5g0520 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Gso5g0520 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gso5g0520 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gso5g0520 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0520 Gso-Chr5 5719375 5721924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0520 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 90.686 9.38e-127 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0520 K02877 - gmx:100306052 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0520 5 5719375 5721924 Gso17g1209 17 11632668 11635125 GST
Gso1g1768 1 54488235 54490370 Gso5g0520 5 5719375 5721924 PCT
Gso11g0303 11 2553449 2555559 Gso5g0520 5 5719375 5721924 PCT
Gso5g0520 5 5719375 5721924 Gso1g1768 1 54488235 54490370 PCT
Gso5g0520 5 5719375 5721924 Gso11g0303 11 2553449 2555559 PCT