Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0508 ATGATGCAACCGCAGCTGCTGCCCAGCGCTGCGTTTGAGTTCTTTCTCTGGATAATCCGAATCCAGGGATTTGTCCAACGCCTGAAGCACCGAACACCCATCCACCACCAGCATTTCTTCCACTCGCAGATATGCCGCGGCCCACATAACCGTAGTAGGGATCCAACTATCCTAGTAAAGGGGAATGCTGTGTTGCTCAGTTATCTTATGTCTTTGGGCCTCGAATCTCTTACCCTTGTCATTTTTACTTCCTTTGCTACCTTCCTTATTCTCCTACCCCTTGCCTTCTATTATGAAAGGTATAAATGGCCAACGAGAGTCAGTTTCAAGTTGCTTATACAGCTTCTCTTGCTTTCGTTAGGAGGGGTAACATTGTTCCAGTCTCTATTCCTTAAAGGAATCAATCTAACCTCGCCAGCAATGGGAACAGCCATGCCAAACCTTGCACCAGGTCTTATCTTCATCATCGCATGGATTTTTCGGTTGGAAAAAGTCGACTTGAGCTGCACATATAGTAGAGTGAAAATCATTGGCACATTCCTTTGTGTCTTGGGGGCTCTCACAATGAGCATACTGCAAAGCATCTCTACAACACCTATTACCGCTAAAGAGGGAACAATTCAATTATTATCTCCACCAAATGTAACGTTTGACAGACACAAGATAATCGGTTGTCTCTATCTCTTGGTCGCAATCCTCATATTATCAAGCAACATTGTCCTCCAGGCCTTTACTCTAGGAGATTTTCCTGCACCGATGTCCTTGTGTGCAATAACTTCGTTTTTCGGGACGTTCATGACTGCCGCAGTTCAATTAGTTGAAGATCACGAATTCAAAACAGGTTGGCCAATTGTGGGTGTTGGAGACATGATTGCCTATTCTCTTCTGGCAGGTGCAGTGAATGGAATATGCTTGAGCGTCAATGGTTGGGCACTTGAGAAGAGAGGGCCAGTGTTGATCTCCATGTTCAGCCCTATTGGCACAGTCTGCTCTGTCATTTTCTCAGTTGTTACTCTAGGACAAACCATTAATATTGGAAGCTTTGCCGGTATGTTCCTCATGTTCACTGGGCTCTACTTTGTGCTTTGGGCCAAAGGGAAAGAAGGCTTTGCAAAAGGAGGTGGCTTAGAGAGTGAGTATGATGCAGAGAAGCCTCTCTTAAGTTAA 1167 0.4507 MMQPQLLPSAAFEFFLWIIRIQGFVQRLKHRTPIHHQHFFHSQICRGPHNRSRDPTILVKGNAVLLSYLMSLGLESLTLVIFTSFATFLILLPLAFYYERYKWPTRVSFKLLIQLLLLSLGGVTLFQSLFLKGINLTSPAMGTAMPNLAPGLIFIIAWIFRLEKVDLSCTYSRVKIIGTFLCVLGALTMSILQSISTTPITAKEGTIQLLSPPNVTFDRHKIIGCLYLLVAILILSSNIVLQAFTLGDFPAPMSLCAITSFFGTFMTAAVQLVEDHEFKTGWPIVGVGDMIAYSLLAGAVNGICLSVNGWALEKRGPVLISMFSPIGTVCSVIFSVVTLGQTINIGSFAGMFLMFTGLYFVLWAKGKEGFAKGGGLESEYDAEKPLLS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0508 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 88 191 - -
Gso5g0508 388 PANTHER OS11G0588100 PROTEIN 59 388 - -
Gso5g0508 388 PANTHER WAT1-RELATED PROTEIN 59 388 IPR030184 GO:0016021|GO:0022857
Gso5g0508 388 Pfam EamA-like transporter family 223 362 IPR000620 GO:0016020|GO:0016021
Gso5g0508 388 Pfam EamA-like transporter family 70 190 IPR000620 GO:0016020|GO:0016021
Gso5g0508 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 289 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0508 Gso-Chr5 5572004 5578480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0508 34 372 Nodulin-like Gene Family AT5G47470 51.955 3.08e-124 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0508 - - gmx:100809182 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1779 1 54585136 54588197 Gso5g0508 5 5572004 5578480 PCT
Gso5g0508 5 5572004 5578480 Gso1g1779 1 54585136 54588197 PCT