Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0507 ATGGATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCTCCAATGGCAGAGCCCTTGGTGGCCACATGAAGGCTCACCTTGCTACTCTCCCTCTCCCTCCAAAGCCTCACTCTTATTCCTCTTCCTCTGACTCAGAACAAGAACAAGAACAAGAATCTCTTAATTATGCTTTAAGGGAGAATCCTAAGAAGAGCTTCAGGGTTGCGGATCCTGAAGACAGAGAGAGCGAAACAGAGTCTAGAAACCCCACTCGCCAACGATCCAAGCGCAACCGGAAATCCACCATGCCGAAGCTCACACCGCCACCCCACCCCGAACCCGAGCCTCTCAGCTCCGTCTCCGACACCTCCCCCGAAGAAGACGTCGCCATGTGCCTCATGATGCTCTCCCGCGACACGTGGCAGCAACACAAGCACGCCAATGCAGCTACACCTAAGAGGCGCTGCAGTAGCGGATCAGAGATCAAGAAAAATGTCCGCGGGAACCACCTCTGCCACAAATGTCACAAATCCTTTCGATCTTCTCGCGCGTTCGGAAGCCACAGAAATGTGTGTTGTCCCCGCGAGGAAGGCCAAAATAATTACAACAACAACCGTAGCACTAAGGTTTTCGAATGTCCGTTCTGTTACAAGGTGTTTGGCTCTGGCCAAGCGCTCGGTGGACACAAGAGATCTCACCTAATTCCTTCCTCGTCTTCAACCGTTAACGATTCTGTTAAGTTGAAACATAGCTTCATAGATCTCAACTTGCCGGCTCCGGCGGAAGACGACGACCTTAGCGTTGTTTCTGATGCGTAA 798 0.5125 MDRHKCKLCSRSFSNGRALGGHMKAHLATLPLPPKPHSYSSSSDSEQEQEQESLNYALRENPKKSFRVADPEDRESETESRNPTRQRSKRNRKSTMPKLTPPPHPEPEPLSSVSDTSPEEDVAMCLMMLSRDTWQQHKHANAATPKRRCSSGSEIKKNVRGNHLCHKCHKSFRSSRAFGSHRNVCCPREEGQNNYNNNRSTKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSVKLKHSFIDLNLPAPAEDDDLSVVSDA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0507 265 MobiDBLite consensus disorder prediction 28 118 - -
Gso5g0507 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 226 IPR013087 -
Gso5g0507 265 MobiDBLite consensus disorder prediction 35 58 - -
Gso5g0507 265 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Gso5g0507 265 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gso5g0507 265 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Gso5g0507 265 SUPERFAMILY beta-beta-alpha zinc fingers 201 227 IPR036236 -
Gso5g0507 265 SMART c2h2final6 204 226 IPR013087 -
Gso5g0507 265 SMART c2h2final6 4 26 IPR013087 -
Gso5g0507 265 SMART c2h2final6 163 183 IPR013087 -
Gso5g0507 265 Gene3D Classic Zinc Finger 160 226 - -
Gso5g0507 265 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 265 IPR044303 GO:0006355
Gso5g0507 265 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 265 - -
Gso5g0507 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gso5g0507 265 Pfam C2H2-type zinc finger 203 227 - -
Gso5g0507 265 Pfam C2H2-type zinc finger 3 28 - -
Gso5g0507 265 MobiDBLite consensus disorder prediction 63 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0507 Gso-Chr5 5554481 5556003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0507 1 262 C2H2 Transcription Factor Family AT3G60580 35.762 6.85e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g0507 zf-C2H2_6 3.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0507 - - gmx:100806512 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0507 5 5554481 5556003 Gso17g1202 17 11557489 11558743 GST
Gso1g1780 1 54597238 54598478 Gso5g0507 5 5554481 5556003 PCT
Gso11g0291 11 2447480 2448810 Gso5g0507 5 5554481 5556003 PCT
Gso5g0507 5 5554481 5556003 Gso1g1780 1 54597238 54598478 PCT
Gso5g0507 5 5554481 5556003 Gso11g0291 11 2447480 2448810 PCT